Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5Q02_RS06605 Genome accession   NZ_CP081942
Coordinates   1481275..1482765 (-) Length   496 a.a.
NCBI ID   WP_225837581.1    Uniprot ID   -
Organism   Pseudomonas sp. MM211     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1476275..1487765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Q02_RS06590 (K5Q02_06565) - 1477068..1477949 (+) 882 WP_225839607.1 ABC transporter permease subunit -
  K5Q02_RS06595 (K5Q02_06570) - 1477946..1478821 (+) 876 WP_225837568.1 ABC transporter permease subunit -
  K5Q02_RS06600 (K5Q02_06575) betT 1479078..1481051 (-) 1974 WP_225837570.1 choline BCCT transporter BetT -
  K5Q02_RS06605 (K5Q02_06580) comM 1481275..1482765 (-) 1491 WP_225837581.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K5Q02_RS06610 (K5Q02_06585) - 1482847..1483119 (-) 273 WP_225837582.1 accessory factor UbiK family protein -
  K5Q02_RS06615 (K5Q02_06590) glnK 1483520..1483858 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  K5Q02_RS06620 (K5Q02_06595) - 1483900..1485216 (+) 1317 WP_225837583.1 ammonium transporter -
  K5Q02_RS06625 (K5Q02_06600) - 1485335..1486588 (+) 1254 WP_225837585.1 ammonium transporter -
  K5Q02_RS06630 (K5Q02_06605) - 1486733..1487158 (+) 426 WP_225837586.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  K5Q02_RS06635 (K5Q02_06610) sutA 1487235..1487555 (+) 321 WP_070885922.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52867.88 Da        Isoelectric Point: 7.9664

>NTDB_id=598557 K5Q02_RS06605 WP_225837581.1 1481275..1482765(-) (comM) [Pseudomonas sp. MM211]
MSLAVVHSRAQVGVDAPIVTVEAHLANGLPSLALVGLPEAAVKESKDRVRSAILNCALDFPPRRITLNLAPADLPKDGGR
FDLAIALGILAASSQVPADSLTPLECLGELALSGAIRPVQGVLPAALAAREAGRTLVVPKENAEEASLASGLTVLAVGHL
LELVAHLNGQTPLAVYQAQGLLRHTQPYPDLAEVQGQIAAKRALLVAAAGVHNLLLSGPPGTGKTLLASRLPGLLPPLTE
EEALQVAAIRSVASHTPLQSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVIARARDKVSFPARFQLVAAMNPCPCGFLGDPSGRCRCSPDQIQRYRGKLSGPLLDRIDLHITVARESTALGMPQES
RESSATAAARVAAARDIQLRRQGVANAFLDLPGLREHCALSDIDRQWLEHACERLTLSLRSAHRVLKVARTLADLQAQEA
ISRQHLAEALQYRTNL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=598557 K5Q02_RS06605 WP_225837581.1 1481275..1482765(-) (comM) [Pseudomonas sp. MM211]
ATGTCATTGGCCGTAGTCCACAGCCGCGCCCAGGTTGGTGTAGACGCCCCCATCGTTACCGTAGAGGCCCATTTGGCCAA
CGGCCTGCCGTCCCTGGCGCTGGTCGGGTTACCGGAAGCGGCAGTCAAGGAAAGTAAGGATCGTGTGCGCAGCGCCATCC
TCAATTGCGCTCTGGATTTTCCGCCTCGTCGTATCACCTTGAATCTGGCACCAGCCGATTTACCAAAGGACGGCGGCCGT
TTCGACCTTGCCATTGCCCTGGGCATTCTGGCCGCCAGCAGCCAGGTACCAGCAGACTCCCTGACCCCGCTCGAATGCCT
TGGCGAACTGGCGTTATCTGGCGCCATCCGTCCAGTACAAGGCGTGCTGCCTGCAGCTTTGGCGGCTCGAGAAGCTGGGC
GCACCCTTGTGGTGCCCAAGGAAAATGCCGAAGAAGCCAGCCTGGCGTCAGGGCTGACGGTGCTGGCGGTCGGTCATCTC
TTGGAACTGGTCGCTCACCTGAACGGCCAGACGCCATTGGCCGTTTACCAAGCTCAAGGCCTGCTACGCCACACTCAACC
CTATCCGGATCTGGCCGAAGTGCAGGGGCAAATTGCTGCCAAGCGTGCTCTGCTGGTGGCTGCTGCCGGGGTGCACAATC
TGCTGCTGAGCGGCCCACCTGGCACGGGCAAAACGCTACTGGCGAGCCGTCTACCCGGCTTGCTGCCGCCCCTTACAGAA
GAAGAGGCCCTGCAGGTTGCGGCGATTCGCTCGGTCGCCAGTCACACCCCTTTACAGAGCTGGCCGCAGCGACCATTTAG
GCATCCCCATCACAGCGCATCGGGGCCGGCGTTGGTGGGTGGCGGCAGTCGTCCTCAACCCGGAGAAATCACCCTCGCTC
ACCACGGAGTGCTGTTCTTGGACGAGTTGCCCGAGTTCGACAGGCGCGTCCTCGAGGTGCTCAGAGAGCCACTTGAAAGC
GGTCATATCGTTATCGCCCGGGCCCGCGACAAAGTCAGCTTCCCTGCCAGGTTCCAACTCGTCGCCGCCATGAACCCCTG
CCCCTGCGGCTTTCTCGGTGACCCCAGCGGCCGCTGCCGCTGCAGCCCGGATCAGATCCAGCGCTATCGCGGCAAGCTGT
CCGGCCCGCTGCTCGATCGCATCGACCTGCATATTACCGTTGCCCGAGAAAGCACGGCGCTCGGCATGCCACAGGAAAGC
CGCGAAAGCAGTGCAACAGCGGCGGCTCGAGTCGCCGCGGCGCGGGATATCCAGTTACGCCGCCAGGGTGTCGCCAATGC
CTTTCTCGACCTACCAGGATTACGTGAGCACTGCGCCCTGAGCGACATCGACCGCCAATGGCTGGAGCACGCTTGCGAAC
GCCTGACCTTATCACTGCGTTCCGCTCACCGCGTGCTCAAGGTAGCACGCACACTGGCAGATCTGCAGGCGCAAGAGGCG
ATCAGCCGCCAGCATCTGGCAGAAGCTCTGCAGTACCGCACCAACCTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.2

100

0.546
  comM Vibrio cholerae strain A1552

54.343

99.798

0.542
  comM Vibrio campbellii strain DS40M4

54.343

99.798

0.542
  comM Glaesserella parasuis strain SC1401

53.4

100

0.538
  comM Legionella pneumophila str. Paris

49.499

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.499

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.139

100

0.47