Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5O18_RS11560 Genome accession   NZ_CP081939
Coordinates   2326052..2327587 (+) Length   511 a.a.
NCBI ID   WP_110479511.1    Uniprot ID   A0AAE5WGM6
Organism   Avibacterium paragallinarum strain p4chr1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2321052..2332587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS11540 (K5O18_11540) selB 2321117..2322976 (-) 1860 WP_110479513.1 selenocysteine-specific translation elongation factor -
  K5O18_RS11545 (K5O18_11545) selA 2322973..2324358 (-) 1386 WP_222593630.1 L-seryl-tRNA(Sec) selenium transferase -
  K5O18_RS11550 (K5O18_11550) - 2324603..2324941 (-) 339 WP_035686453.1 YggL family protein -
  K5O18_RS11555 (K5O18_11555) trmB 2324971..2325723 (-) 753 WP_035686455.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  K5O18_RS11560 (K5O18_11560) comM 2326052..2327587 (+) 1536 WP_110479511.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K5O18_RS11565 (K5O18_11565) - 2327695..2329227 (-) 1533 WP_110479510.1 aspartate aminotransferase family protein -
  K5O18_RS11570 (K5O18_11570) - 2329305..2330669 (-) 1365 WP_110479509.1 diaminobutyrate--2-oxoglutarate transaminase -
  K5O18_RS11575 (K5O18_11575) - 2330931..2331368 (-) 438 WP_110479508.1 hypothetical protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55924.44 Da        Isoelectric Point: 9.9640

>NTDB_id=598539 K5O18_RS11560 WP_110479511.1 2326052..2327587(+) (comM) [Avibacterium paragallinarum strain p4chr1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALLNANFKYPAKRITVNLAPADLPKDGGR
FDLPIAIGILAASDQVNPQALKQFELLGELALTGHLRGVHGIIPAILAARKVKRRTIIAKSNTNEAALVADQESYIAQNL
LEVVQFLNDTLKLPLASDFTTPSAVDFSCKNPQDLTDIIGQQHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTTLLP
EMTEQEAIETASITSLVQNELNFHNWKQRPFRSPHHSASLPALVGGGTIPRPGEISLAHNGVLFLDELPEFDRKVLDALR
QPLESGEIIISRANAKICFPARFQLIAAMNPSPTGHYTGVHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPKGTLQQ
IENKGETSEQVRAKILQVREQQFARAGKINAHLTSKEIARDCAISAQDGAFLENTLTQLGLSVRAYHRILKVARTIADLN
NEAQIQRPHLAEALSYRAMDRLLQKLSRNLG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=598539 K5O18_RS11560 WP_110479511.1 2326052..2327587(+) (comM) [Avibacterium paragallinarum strain p4chr1]
ATGTCATTAGCTATCGTTTACAGTCGTGCGTCAATGGGGGTTCAAGCTCCCTTAGTTACCATTGAAGTGCATTTAAGCAA
CGGAAAGCCAGGTTTTACCCTTGTGGGATTACCAGAAAAAACGGTGAAAGAAGCACAAGATCGCGTGCGAAGTGCGTTAT
TAAATGCCAATTTCAAATATCCTGCCAAGCGAATTACCGTGAATCTTGCCCCTGCGGATTTACCTAAGGACGGTGGACGG
TTTGATTTGCCCATTGCAATTGGCATTTTAGCCGCTTCCGATCAAGTAAATCCTCAAGCACTCAAACAATTTGAGTTATT
AGGCGAGTTGGCTTTAACGGGACATCTGCGTGGCGTACACGGCATTATTCCTGCGATTTTAGCTGCGAGAAAGGTAAAGC
GTCGTACCATAATTGCAAAATCCAACACGAATGAAGCCGCCCTAGTCGCTGATCAAGAGAGTTACATCGCTCAAAATTTA
CTTGAAGTGGTACAGTTTCTTAATGATACATTAAAACTCCCCCTTGCCTCAGATTTCACGACACCAAGTGCGGTAGATTT
TTCTTGCAAAAATCCCCAAGATCTCACAGATATTATCGGACAACAGCACGCTAAACGAGCCTTAACCATTGCCGCAGCAG
GGCAACATAATTTGCTCCTACTCGGCCCACCTGGCACGGGCAAAACAATGCTCGCCAGCCGTTTAACCACGCTGTTGCCT
GAGATGACGGAACAAGAAGCCATTGAAACCGCTTCCATAACCAGTTTAGTGCAAAATGAGCTGAATTTTCATAACTGGAA
ACAACGCCCTTTCCGTTCGCCACACCATAGTGCCTCCTTACCTGCTTTGGTGGGTGGGGGAACAATCCCAAGACCAGGCG
AAATTTCCCTAGCACATAATGGCGTACTATTTTTAGATGAACTGCCCGAATTTGATCGCAAAGTGCTTGACGCATTACGT
CAGCCGTTAGAAAGTGGGGAAATTATTATTTCGCGTGCCAATGCAAAAATTTGTTTTCCCGCTAGATTTCAGCTTATTGC
CGCAATGAACCCTAGCCCCACAGGGCATTACACGGGCGTACATAATCGCACCTCCCCCCAGCAGGTAATGCGTTATTTAA
ATCGCCTTTCGGGACCATTTTTAGATCGCTTTGATTTATCCATTGAAGTACCATTGCTTCCCAAAGGCACGCTACAACAA
ATTGAAAATAAAGGGGAAACCAGCGAACAGGTGAGAGCAAAGATTTTACAGGTTCGTGAACAACAATTCGCTCGTGCAGG
AAAAATTAACGCCCATCTCACCAGTAAAGAAATCGCACGGGATTGTGCAATCTCCGCACAAGATGGGGCTTTTTTAGAAA
ACACCTTAACCCAATTAGGGCTTTCAGTGCGTGCTTACCACCGCATTTTAAAAGTCGCACGCACCATCGCCGATCTAAAT
AATGAAGCACAAATTCAACGCCCCCACTTAGCCGAAGCCCTATCCTATCGAGCAATGGATCGACTACTACAAAAGCTGTC
TCGTAATCTAGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

82.446

99.217

0.818
  comM Glaesserella parasuis strain SC1401

75.148

99.217

0.746
  comM Vibrio cholerae strain A1552

65.286

99.217

0.648
  comM Vibrio campbellii strain DS40M4

63.708

99.217

0.632
  comM Legionella pneumophila str. Paris

50.1

98.043

0.491
  comM Legionella pneumophila strain ERS1305867

50.1

98.043

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.68

100

0.468