Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   BJAB0715_RS17740 Genome accession   NC_021733
Coordinates   3688423..3689163 (-) Length   246 a.a.
NCBI ID   WP_000076099.1    Uniprot ID   A0A9P2QDS6
Organism   Acinetobacter baumannii BJAB0715     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3683423..3694163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB0715_RS17720 (BJAB0715_03545) aroB 3683965..3685047 (-) 1083 WP_020753499.1 3-dehydroquinate synthase -
  BJAB0715_RS17725 (BJAB0715_03546) aroK 3685076..3685645 (-) 570 WP_000643712.1 shikimate kinase AroK -
  BJAB0715_RS17730 (BJAB0715_03547) pilQ 3685657..3687822 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  BJAB0715_RS17735 (BJAB0715_03548) pilP 3687885..3688412 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  BJAB0715_RS17740 (BJAB0715_03549) pilO 3688423..3689163 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  BJAB0715_RS17745 (BJAB0715_03550) pilN 3689160..3689801 (-) 642 WP_020753500.1 PilN domain-containing protein Machinery gene
  BJAB0715_RS17750 (BJAB0715_03551) pilM 3689801..3690859 (-) 1059 WP_038346731.1 pilus assembly protein PilM Machinery gene
  BJAB0715_RS17755 (BJAB0715_03552) ponA 3691020..3693575 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27801.55 Da        Isoelectric Point: 4.8357

>NTDB_id=59785 BJAB0715_RS17740 WP_000076099.1 3688423..3689163(-) (pilO) [Acinetobacter baumannii BJAB0715]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=59785 BJAB0715_RS17740 WP_000076099.1 3688423..3689163(-) (pilO) [Acinetobacter baumannii BJAB0715]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment