Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilM   Type   Machinery gene
Locus tag   BJAB0715_RS17750 Genome accession   NC_021733
Coordinates   3689801..3690859 (-) Length   352 a.a.
NCBI ID   WP_038346731.1    Uniprot ID   -
Organism   Acinetobacter baumannii BJAB0715     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3684801..3695859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB0715_RS17725 (BJAB0715_03546) aroK 3685076..3685645 (-) 570 WP_000643712.1 shikimate kinase AroK -
  BJAB0715_RS17730 (BJAB0715_03547) pilQ 3685657..3687822 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  BJAB0715_RS17735 (BJAB0715_03548) pilP 3687885..3688412 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  BJAB0715_RS17740 (BJAB0715_03549) pilO 3688423..3689163 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  BJAB0715_RS17745 (BJAB0715_03550) pilN 3689160..3689801 (-) 642 WP_020753500.1 PilN domain-containing protein Machinery gene
  BJAB0715_RS17750 (BJAB0715_03551) pilM 3689801..3690859 (-) 1059 WP_038346731.1 pilus assembly protein PilM Machinery gene
  BJAB0715_RS17755 (BJAB0715_03552) ponA 3691020..3693575 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  BJAB0715_RS17760 (BJAB0715_03553) - 3693593..3694417 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  BJAB0715_RS17765 (BJAB0715_03554) - 3694420..3694752 (-) 333 WP_000169603.1 hypothetical protein -

Sequence


Protein


Download         Length: 352 a.a.        Molecular weight: 39060.64 Da        Isoelectric Point: 4.4618

>NTDB_id=59787 BJAB0715_RS17750 WP_038346731.1 3689801..3690859(-) (pilM) [Acinetobacter baumannii BJAB0715]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDDEREVQIRVDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
VDLNPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=59787 BJAB0715_RS17750 WP_038346731.1 3689801..3690859(-) (pilM) [Acinetobacter baumannii BJAB0715]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGACGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTGCCGGATCGTCTTG
CGAATCCAAATCGTGTAAATGTGCTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACCCGCGTTGAAGTGCTTGAATTG
GTAGATTTAAATCCTAAATTGGCTGATGTTGAAAGTTACGCGGTTGAACGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATGGGTGCAAATACCATAGGGATTTTAGATATCGGCCATACCATGACGACATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTCTTTGGCGGAAAACAACTTACGCTTGAAATTCAAAGTCGTTATGGTTTGTCTTTAGAAGAA
GCAAGCCGAGCGAAAAAAGATCGTTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGTTCACTACAATTTTTCTTTTCTTCATCCCAATTTAACGAAATAGACCATATTTTGCTCGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCCAAGCTTTTGCAGCAAAAATTAGGTTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

99.716

100

0.997

  comM Acinetobacter nosocomialis M2

98.864

100

0.989

  comM Acinetobacter baylyi ADP1

81.25

100

0.813

  pilM Legionella pneumophila strain ERS1305867

41.808

100

0.42


Multiple sequence alignment