Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BJAB0715_RS17745 Genome accession   NC_021733
Coordinates   3689160..3689801 (-) Length   213 a.a.
NCBI ID   WP_020753500.1    Uniprot ID   -
Organism   Acinetobacter baumannii BJAB0715     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3684160..3694801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB0715_RS17725 (BJAB0715_03546) aroK 3685076..3685645 (-) 570 WP_000643712.1 shikimate kinase AroK -
  BJAB0715_RS17730 (BJAB0715_03547) pilQ 3685657..3687822 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  BJAB0715_RS17735 (BJAB0715_03548) pilP 3687885..3688412 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  BJAB0715_RS17740 (BJAB0715_03549) pilO 3688423..3689163 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  BJAB0715_RS17745 (BJAB0715_03550) pilN 3689160..3689801 (-) 642 WP_020753500.1 PilN domain-containing protein Machinery gene
  BJAB0715_RS17750 (BJAB0715_03551) pilM 3689801..3690859 (-) 1059 WP_038346731.1 pilus assembly protein PilM Machinery gene
  BJAB0715_RS17755 (BJAB0715_03552) ponA 3691020..3693575 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  BJAB0715_RS17760 (BJAB0715_03553) - 3693593..3694417 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  BJAB0715_RS17765 (BJAB0715_03554) - 3694420..3694752 (-) 333 WP_000169603.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24022.41 Da        Isoelectric Point: 5.1310

>NTDB_id=59786 BJAB0715_RS17745 WP_020753500.1 3689160..3689801(-) (pilN) [Acinetobacter baumannii BJAB0715]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQREA
IIERMKLIQGLQSQRPVVVRLIDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPMVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=59786 BJAB0715_RS17745 WP_020753500.1 3689160..3689801(-) (pilN) [Acinetobacter baumannii BJAB0715]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGTACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGAAGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTATTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTATGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.592

100

0.986
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment