Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   K5J94_RS05295 Genome accession   NZ_CP081502
Coordinates   1086596..1087300 (+) Length   234 a.a.
NCBI ID   WP_159564281.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081596..1092300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS05275 ftsY 1082376..1083836 (+) 1461 WP_221912577.1 signal recognition particle-docking protein FtsY -
  K5J94_RS05280 - 1084249..1085064 (-) 816 WP_221912578.1 TIGR03943 family putative permease subunit -
  K5J94_RS05285 - 1085061..1085969 (-) 909 WP_159564283.1 permease -
  K5J94_RS05290 - 1086015..1086167 (-) 153 WP_167547764.1 SPJ_0845 family protein -
  K5J94_RS05295 vicR 1086596..1087300 (+) 705 WP_159564281.1 response regulator transcription factor Regulator
  K5J94_RS05300 pnpS 1087306..1088649 (+) 1344 WP_221912579.1 two-component system histidine kinase PnpS -
  K5J94_RS05305 - 1088841..1089719 (+) 879 WP_159545764.1 substrate-binding domain-containing protein -
  K5J94_RS05310 pstC 1089787..1090650 (+) 864 WP_159564277.1 phosphate ABC transporter permease subunit PstC -
  K5J94_RS05315 pstA 1090643..1091458 (+) 816 WP_159545760.1 phosphate ABC transporter permease PstA -
  K5J94_RS05320 pstB 1091461..1092213 (+) 753 WP_159545758.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 27098.46 Da        Isoelectric Point: 6.6573

>NTDB_id=597067 K5J94_RS05295 WP_159564281.1 1086596..1087300(+) (vicR) [Streptococcus halichoeri strain Shali_VAS-CPH]
MKKKLLVVDDEEHILRLLDYHLQKEGYATELVSDGRTALKLAQSEPYNFIILDIMLPQLDGIEVCKRLRAKGIKTPIMMV
SAKGEEFDKVLALELGADDYLTKPFSPRELVARVKAVLRRTDTKASLQNEENLDDALTIQDITIYPERHEVYKAGQLLRL
TPKEFELLLYLIKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKVEDDAKNPKLIETIRGYGYKFKGD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=597067 K5J94_RS05295 WP_159564281.1 1086596..1087300(+) (vicR) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGAAAAAGAAGTTACTAGTTGTGGATGATGAAGAGCACATTTTACGACTGTTAGACTACCATTTGCAAAAGGAAGGCTA
TGCAACTGAGCTGGTTAGTGATGGCAGGACTGCGTTAAAGTTAGCTCAATCAGAGCCCTATAATTTCATCATTTTGGATA
TTATGCTGCCCCAATTGGATGGCATAGAAGTTTGCAAACGTTTACGTGCGAAGGGCATTAAAACCCCGATCATGATGGTA
TCAGCCAAAGGCGAAGAGTTTGATAAAGTCCTCGCTTTAGAACTAGGAGCAGATGATTATTTGACCAAGCCCTTTAGCCC
CAGAGAATTGGTCGCACGTGTCAAGGCAGTTTTACGGCGAACAGATACTAAAGCCAGTTTACAAAATGAAGAAAATCTTG
ATGATGCTCTCACTATTCAGGACATTACCATTTACCCAGAACGTCATGAAGTATATAAGGCTGGCCAATTATTGCGGTTA
ACTCCCAAGGAATTTGAACTACTCTTATATTTGATTAAGCATCCTAACATGACTTTAACGCGTGAGCGTTTATTAGAACG
TATCTGGGGTTATGATTTTGGACAAGAAACACGACTGGTGGATGTGCATATTGGCAAATTGCGGGAAAAAGTAGAAGATG
ATGCAAAAAATCCCAAATTGATTGAAACCATTCGTGGTTACGGCTATAAGTTTAAAGGAGACTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

50.215

99.573

0.5
  micA Streptococcus pneumoniae Cp1015

47.21

99.573

0.47
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.228

97.436

0.402
  covR Streptococcus salivarius strain HSISS4

38.865

97.863

0.38
  ciaR Streptococcus mutans UA159

37.339

99.573

0.372