Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5J94_RS03605 Genome accession   NZ_CP081502
Coordinates   727641..728135 (+) Length   164 a.a.
NCBI ID   WP_159545426.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 722641..733135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS03585 - 722915..725248 (+) 2334 WP_221913547.1 endonuclease MutS2 -
  K5J94_RS03590 trxA 725335..725649 (+) 315 WP_159545420.1 thioredoxin -
  K5J94_RS03595 mutY 725978..727141 (-) 1164 WP_159564761.1 A/G-specific adenine glycosylase -
  K5J94_RS03600 rpsF 727324..727614 (+) 291 WP_159545424.1 30S ribosomal protein S6 -
  K5J94_RS03605 ssb 727641..728135 (+) 495 WP_159545426.1 single-stranded DNA-binding protein Machinery gene
  K5J94_RS03610 rpsR 728292..728531 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  K5J94_RS03615 - 729155..729814 (-) 660 WP_159545428.1 DUF1129 domain-containing protein -
  K5J94_RS03620 - 729919..730863 (-) 945 WP_159545430.1 magnesium transporter CorA family protein -
  K5J94_RS03625 - 731338..732249 (-) 912 WP_221913549.1 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18189.93 Da        Isoelectric Point: 4.9056

>NTDB_id=597050 K5J94_RS03605 WP_159545426.1 727641..728135(+) (ssb) [Streptococcus halichoeri strain Shali_VAS-CPH]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKNQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
HYENQQGQRVYVTEVVADNFQMLESRATREGGSANAYNNGGSFNNSSSNDSYSAPSQQTPNFGRDDSPFGNSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=597050 K5J94_RS03605 WP_159545426.1 727641..728135(+) (ssb) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGATTAATAATGTAGTGCTTGTTGGTCGCATGACCAAAGATGCAGAACTCCGTTATACCCCTAGCCAAGTAGCAGTGGC
GACTTTTACGCTTGCTGTGAACCGTACCTTTAAAAACCAAAATGGCGAGCGCGAAGCTGATTTCATTAACTGTGTTATCT
GGCGTCAACCAGCTGAAAACTTAGCTAACTGGGCTAAAAAAGGTGCCTTGATTGGAATTACGGGTCGCATTCAGACCCGC
CATTATGAGAATCAACAAGGTCAACGGGTCTATGTAACAGAAGTGGTTGCGGACAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGGGGATCAGCTAACGCTTATAATAATGGCGGCAGCTTTAACAACAGTTCTTCAAATGATAGTTACTCTG
CTCCTTCACAACAAACACCTAACTTTGGTCGAGACGATAGTCCCTTTGGGAATTCTAACCCGATGGACATCTCAGACGAC
GATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.96

100

0.622
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.459

74.39

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.724

70.732

0.366