Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   K5J94_RS02910 Genome accession   NZ_CP081502
Coordinates   583610..584347 (+) Length   245 a.a.
NCBI ID   WP_159548506.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 578610..589347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS02900 - 580966..582315 (+) 1350 WP_159543298.1 GHKL domain-containing protein -
  K5J94_RS02905 - 582302..583606 (+) 1305 WP_159564414.1 GHKL domain-containing protein -
  K5J94_RS02910 comE/blpR 583610..584347 (+) 738 WP_159548506.1 LytTR family DNA-binding domain-containing protein Regulator
  K5J94_RS02915 rnpA 584750..585088 (+) 339 WP_159543500.1 ribonuclease P protein component -
  K5J94_RS02920 - 585075..585908 (+) 834 WP_269437379.1 YidC/Oxa1 family membrane protein insertase -
  K5J94_RS02925 jag 585919..586803 (+) 885 WP_221913491.1 RNA-binding cell elongation regulator Jag/EloR -
  K5J94_RS02930 - 587016..588347 (-) 1332 WP_221913495.1 Nramp family divalent metal transporter -
  K5J94_RS02935 - 588759..588920 (+) 162 WP_006531779.1 hypothetical protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28946.40 Da        Isoelectric Point: 6.8339

>NTDB_id=597047 K5J94_RS02910 WP_159548506.1 583610..584347(+) (comE/blpR) [Streptococcus halichoeri strain Shali_VAS-CPH]
MNIFVLEDDFAQQTRIETVIEDIIAEQRIQYYQLNIFSSSKKLYDSIQEKGAHQLFFLDIEIKHEAKKGLELAAEIRKKD
PYAVIVFVTTHSEFAPISFRYKVSALDFIDKAVDQDQFKEQIEECIKYTQGLMSNHITEDMFQFETPQTRIRLPYKDILY
FATSTTPHKVCLWTKTERLELYGKLSDIRNAFPRLFMCHRSYLVNLENIVRIDKTKQLAYFANGDFCMVSRLKMKALVET
WQHLP

Nucleotide


Download         Length: 738 bp        

>NTDB_id=597047 K5J94_RS02910 WP_159548506.1 583610..584347(+) (comE/blpR) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGAATATATTTGTTCTAGAAGATGACTTTGCGCAACAAACGCGCATTGAAACCGTGATTGAAGATATAATTGCTGAGCA
GCGCATCCAGTATTATCAGTTAAATATCTTCTCTAGCTCAAAAAAACTCTATGACAGTATCCAAGAAAAAGGGGCGCATC
AGCTGTTCTTTTTAGATATTGAAATCAAGCACGAAGCCAAAAAAGGTTTAGAGCTAGCAGCTGAGATCAGAAAGAAAGAT
CCCTATGCGGTTATTGTATTTGTCACCACGCATTCAGAGTTTGCACCTATTTCCTTTCGCTATAAGGTCTCTGCTTTAGA
TTTTATTGATAAGGCTGTGGATCAAGACCAGTTTAAAGAACAGATCGAAGAATGCATCAAATACACCCAAGGCTTGATGT
CAAATCATATCACTGAAGATATGTTTCAGTTTGAAACGCCTCAAACACGGATTAGACTACCCTACAAGGATATTTTATAC
TTTGCAACCTCAACCACACCGCATAAGGTCTGCTTATGGACAAAGACGGAACGGCTAGAACTCTATGGCAAATTGTCTGA
CATTAGGAATGCCTTTCCCCGTTTGTTTATGTGCCACCGCTCTTATCTGGTTAATCTTGAAAATATTGTGCGCATTGATA
AAACCAAGCAGCTGGCCTATTTTGCAAATGGTGACTTTTGTATGGTTTCCCGTTTGAAAATGAAAGCTTTGGTCGAAACG
TGGCAGCATTTACCTTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-241)

Response regulator receiver domain (Response_reg)

(3-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

52.101

97.143

0.506
  comE/comE1 Streptococcus equinus JB1

44.958

97.143

0.437
  comE/comE2 Streptococcus equinus JB1

41.393

99.592

0.412
  comE/comE2 Streptococcus gordonii strain NCTC7865

39.024

100

0.392
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

39.024

100

0.392