Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   K5J94_RS01495 Genome accession   NZ_CP081502
Coordinates   294250..295152 (-) Length   300 a.a.
NCBI ID   WP_159565231.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 289250..300152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS01480 - 289676..290113 (-) 438 WP_159545880.1 low molecular weight protein-tyrosine-phosphatase -
  K5J94_RS01485 ruvB 290980..291975 (-) 996 WP_221913262.1 Holliday junction branch migration DNA helicase RuvB -
  K5J94_RS01490 - 292166..293305 (+) 1140 WP_221913264.1 hypothetical protein -
  K5J94_RS01495 comR 294250..295152 (-) 903 WP_159565231.1 helix-turn-helix domain-containing protein Regulator
  K5J94_RS01500 purB 295406..296698 (-) 1293 WP_159545936.1 adenylosuccinate lyase -
  K5J94_RS01505 purK 296811..297887 (-) 1077 WP_221913266.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  K5J94_RS01510 purE 297874..298362 (-) 489 WP_221913268.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  K5J94_RS01515 purD 298552..299811 (-) 1260 WP_159549440.1 phosphoribosylamine--glycine ligase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35712.99 Da        Isoelectric Point: 4.8013

>NTDB_id=597039 K5J94_RS01495 WP_159565231.1 294250..295152(-) (comR) [Streptococcus halichoeri strain Shali_VAS-CPH]
MKRFGKSLRKLRIEKGLTREELCGDESELSIRQLARIESGESIPNLARAVYIARQLQVTIDEITGGESLELPKRYQELKY
VILRIPTYADEATLDVREAQFDEIFETYYDNLPEEEQVVIDCLQSKFEVYKTGDINFGIDILQDYIDQIMLRSIYRLNDL
VILDLYLTCAVVSKFAYAHFDEYLFETVAYRLLTQRENLQLSDKFWLNHVVLNATYVCLRLKKAEYIQSLLNLSQQIMRE
TQDFQKMPLYYMYRWKCCLWIDKKPDEAVLYYQQAIHFSELIDAKHLTQLLREEWEKDSH

Nucleotide


Download         Length: 903 bp        

>NTDB_id=597039 K5J94_RS01495 WP_159565231.1 294250..295152(-) (comR) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGAAGCGATTTGGCAAATCATTGCGTAAGCTTCGAATTGAGAAGGGTTTGACCCGTGAAGAATTGTGTGGAGATGAATC
AGAATTGTCAATTAGGCAATTAGCGCGAATTGAGTCAGGAGAATCAATTCCTAATTTAGCCAGGGCAGTATATATTGCCA
GACAACTCCAGGTGACGATTGATGAAATTACAGGTGGTGAAAGCTTGGAGCTTCCAAAACGTTATCAAGAGTTAAAATAT
GTCATTCTGCGAATCCCAACATATGCTGATGAGGCTACACTAGATGTACGAGAAGCCCAATTTGATGAGATATTTGAAAC
TTACTATGATAATCTACCTGAAGAAGAACAAGTAGTTATTGATTGCTTACAATCAAAGTTTGAAGTATATAAAACAGGTG
ATATTAATTTTGGAATTGATATTCTGCAAGATTATATTGATCAGATAATGTTAAGGTCGATTTATCGTCTTAATGATTTA
GTTATACTAGATTTATATTTGACATGTGCTGTTGTTTCGAAATTTGCCTATGCTCATTTTGATGAGTATCTATTTGAAAC
TGTGGCTTACCGGTTATTAACACAGCGAGAAAATTTACAATTATCAGATAAATTTTGGCTAAATCATGTGGTACTTAATG
CAACGTATGTATGTTTACGTTTGAAAAAAGCTGAATATATTCAAAGTTTATTAAATCTTAGCCAACAAATTATGCGAGAA
ACTCAAGATTTTCAAAAAATGCCTCTTTACTATATGTATCGATGGAAATGCTGTTTATGGATTGATAAGAAACCTGATGA
AGCTGTGCTATATTATCAACAAGCGATTCATTTTTCTGAATTAATTGATGCAAAGCACTTAACTCAACTGTTGCGAGAGG
AGTGGGAAAAAGATTCTCATTGA

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(72-295)

Helix-turn-helix (HTH_3)

(8-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS315

50.667

100

0.507
  comR Streptococcus mutans UA159

47.667

100

0.477
  comR Streptococcus pyogenes MGAS8232

41.946

99.333

0.417
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

42.014

96

0.403
  comR Streptococcus suis P1/7

37.458

99.667

0.373
  comR Streptococcus suis 05ZYH33

37.458

99.667

0.373