Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NAG70_RS20970 Genome accession   NZ_CP097882
Coordinates   4282922..4283458 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4277922..4288458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG70_RS20950 soxR 4279650..4280114 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  NAG70_RS20955 soxS 4280200..4280523 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NAG70_RS20960 pdeC 4280526..4282112 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  NAG70_RS20965 yjcB 4282542..4282823 (+) 282 WP_001295689.1 YjcB family protein -
  NAG70_RS20970 ssb 4282922..4283458 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NAG70_RS20975 uvrA 4283712..4286534 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  NAG70_RS20980 yjbR 4286569..4286925 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NAG70_RS20985 yjbQ 4286929..4287345 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NAG70_RS20990 aphA 4287456..4288169 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=596978 NAG70_RS20970 WP_000168305.1 4282922..4283458(-) (ssb) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=596978 NAG70_RS20970 WP_000168305.1 4282922..4283458(-) (ssb) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489