Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K4A76_RS16890 Genome accession   NZ_CP081491
Coordinates   3796107..3796742 (-) Length   211 a.a.
NCBI ID   WP_009685211.1    Uniprot ID   A0A7W2QUJ4
Organism   Pseudomonas sp. NEEL19     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3791107..3801742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4A76_RS16860 (K4A76_16780) murB 3792205..3793224 (-) 1020 WP_009685204.1 UDP-N-acetylmuramate dehydrogenase -
  K4A76_RS16865 (K4A76_16785) - 3793221..3793685 (-) 465 WP_009685205.1 low molecular weight protein-tyrosine-phosphatase -
  K4A76_RS16870 (K4A76_16790) kdsB 3793685..3794449 (-) 765 WP_054905782.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K4A76_RS16875 (K4A76_16795) - 3794446..3794631 (-) 186 WP_003247142.1 Trm112 family protein -
  K4A76_RS16880 (K4A76_16800) lpxK 3794675..3795676 (-) 1002 WP_274410747.1 tetraacyldisaccharide 4'-kinase -
  K4A76_RS16885 (K4A76_16805) - 3795676..3796110 (-) 435 WP_012271149.1 biopolymer transporter ExbD -
  K4A76_RS16890 (K4A76_16810) exbB 3796107..3796742 (-) 636 WP_009685211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K4A76_RS16895 (K4A76_16815) comA 3797238..3799451 (-) 2214 WP_274410748.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K4A76_RS16900 (K4A76_16820) - 3799594..3800106 (+) 513 Protein_3306 DUF2062 domain-containing protein -
  K4A76_RS16905 (K4A76_16825) - 3800110..3800889 (-) 780 WP_029887525.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=596979 K4A76_RS16890 WP_009685211.1 3796107..3796742(-) (exbB) [Pseudomonas sp. NEEL19]
MWELVKSGGWMMLPIILSSIAAMAIVIERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGTQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=596979 K4A76_RS16890 WP_009685211.1 3796107..3796742(-) (exbB) [Pseudomonas sp. NEEL19]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCAT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCACACTTGCTGGGCCAGGTCTGGATATGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCGCTGCGCGCCGATTCGCCACTGGGTGAGATCCTCGCTGCGGGCCTGGCCAAT
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAAGAGGCAGCTTCGCGCGTCATTCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTAGGCACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCACGCAGATGACCGCCAACGCCGCGGTACTGGCCGGTGGTATTTCCAAGGCCCTGGTCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCTGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2QUJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82