Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K4A76_RS16895 Genome accession   NZ_CP081491
Coordinates   3797238..3799451 (-) Length   737 a.a.
NCBI ID   WP_274410748.1    Uniprot ID   -
Organism   Pseudomonas sp. NEEL19     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3792238..3804451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4A76_RS16865 (K4A76_16785) - 3793221..3793685 (-) 465 WP_009685205.1 low molecular weight protein-tyrosine-phosphatase -
  K4A76_RS16870 (K4A76_16790) kdsB 3793685..3794449 (-) 765 WP_054905782.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K4A76_RS16875 (K4A76_16795) - 3794446..3794631 (-) 186 WP_003247142.1 Trm112 family protein -
  K4A76_RS16880 (K4A76_16800) lpxK 3794675..3795676 (-) 1002 WP_274410747.1 tetraacyldisaccharide 4'-kinase -
  K4A76_RS16885 (K4A76_16805) - 3795676..3796110 (-) 435 WP_012271149.1 biopolymer transporter ExbD -
  K4A76_RS16890 (K4A76_16810) exbB 3796107..3796742 (-) 636 WP_009685211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K4A76_RS16895 (K4A76_16815) comA 3797238..3799451 (-) 2214 WP_274410748.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K4A76_RS16900 (K4A76_16820) - 3799594..3800106 (+) 513 Protein_3306 DUF2062 domain-containing protein -
  K4A76_RS16905 (K4A76_16825) - 3800110..3800889 (-) 780 WP_029887525.1 ABC transporter permease -
  K4A76_RS16910 (K4A76_16830) - 3800886..3801818 (-) 933 WP_009681882.1 ABC transporter ATP-binding protein -
  K4A76_RS16915 (K4A76_16835) - 3801965..3802588 (-) 624 WP_274410749.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79514.21 Da        Isoelectric Point: 10.2289

>NTDB_id=596980 K4A76_RS16895 WP_274410748.1 3797238..3799451(-) (comA) [Pseudomonas sp. NEEL19]
MRTGMLALALGLLCLGFLPALLPDGWLWVLAACAGVCLFTRGWPLGCFLLGLCWASWSAQQALDDRLAAALDGRTLWLEG
RVVGLPARTAHGVRFELEAARSRRAELPQRLQVSWFDGPPVRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPASYGWRDSLRQRLLAVDANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACALAMGAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFLPLLLALVAVLLVEPL
AALLPGFWLSFGAVATLVFCFSARLGAWRPWQAWTRAQWVIAIGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGAGEAFLWLAGGLLDVLFRVLALVAQQRPAWVPPALPLWAWLLVCLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLRTRQHNLLYDAGPARGDYDLGERVVLPTLRKLGVSHLDVMLISHAHADHAGGAG
AIQRGLPVERVIGGEALDDVQLQPCASGEQWEWDGVRFSLWRWAQGRSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATDAPRIDWLQSPHHGSRSSSSEGFMRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVVHDTAVQGALRLVLGGWG
EVEGMRGQRRFWRARGE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=596980 K4A76_RS16895 WP_274410748.1 3797238..3799451(-) (comA) [Pseudomonas sp. NEEL19]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGCTGTGCCTGGGCTTTCTTCCTGCATTGCTACCGGACGGGTGGTT
GTGGGTGCTGGCGGCTTGCGCTGGCGTGTGCCTGTTCACCCGCGGGTGGCCATTGGGCTGTTTTCTGTTGGGGCTGTGCT
GGGCCAGCTGGTCTGCCCAGCAGGCCCTGGATGACCGGCTGGCGGCCGCTTTGGATGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCTTGCCGGCGCGCACGGCGCACGGTGTGCGTTTCGAGCTGGAGGCCGCCCGTTCGCGCCGTGCCGAACT
GCCACAACGCCTGCAAGTCAGCTGGTTCGACGGGCCGCCGGTACGGGCCGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCCGCCGGGTTGTTGAACCCGCATGGGCCGGACCGTGAAGCGCAGTTGCTGGCCCGGCGGGTCGGCGCTACCGGT
ACGGTGAAGGCGGGGCAGCTGCTGGCGCCGGCCAGCTATGGGTGGCGGGATTCGCTGCGCCAGCGCTTGCTGGCGGTCGA
TGCCAACGGCCGGCAGGCCGCGCTGGTGGCCCTGGTGCTCGGCGACGGGGCCGGCCTGGCGCGGGAAGATTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACTTGTTGGTCATTTCCGGCCAGCACATTGGCCTGGTTGCCGGTTTGCTCTACGGCCTG
GTCGCCGGGTTGGCCCGCTGGGGGCTGTGGCCCGCACGGCTGCCTTGGCTGCCCTCGGCGTGCGCGCTGGCCATGGGTGC
GGCACTGGCCTACGGCTGGCTGGCCGGCGCGGGGGTGCCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGGCTGCGTTTTCGGCACCTGGGGGCGTTCCTGCCACTGTTGCTGGCGCTGGTGGCCGTGTTGCTGGTCGAGCCGCTG
GCGGCGCTGCTTCCGGGCTTCTGGCTGTCGTTCGGCGCCGTGGCCACGCTGGTGTTTTGCTTCAGTGCCCGCCTGGGGGC
ATGGCGGCCATGGCAGGCCTGGACGCGGGCGCAGTGGGTGATTGCCATCGGTTTGTTGCCGGTGCTGCTGGCCGTGGGCT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAACCTGGTGGCGGTGCCATGGGTGAGCCTGGCGGTACTGCCGTTGGCCTTG
CTGGGTACCTTGTTGTTGCCGTTGGGTGGGGCTGGGGAGGCCTTCTTGTGGCTGGCAGGTGGCTTGCTGGATGTGCTGTT
TCGGGTGCTGGCGCTGGTTGCGCAGCAACGCCCGGCATGGGTGCCGCCAGCCCTGCCGCTATGGGCCTGGCTGCTGGTCT
GCCTGGGGGCTTTGCTGGTGCTGCTGCCCCGTGGTGTGCCGCTGCGAGGGTTGGGCGGGGTAATGCTGTTGGCCCTTTGG
GTGCCGCGCGAGCCGGTGCCTTTCGGGCAGGTGGAGGTCTGGCAACTGGACGTCGGCCAAGGCTTGGCGGTGCTGTTGCG
CACCCGGCAGCACAACCTGCTGTATGACGCCGGGCCGGCGAGGGGCGACTACGACTTGGGGGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGTTGGGGGTGAGTCACCTGGACGTGATGCTGATCAGCCATGCCCACGCCGATCATGCCGGCGGTGCTGGG
GCGATACAGCGGGGTTTGCCGGTCGAGCGGGTTATCGGTGGGGAAGCGCTGGATGATGTTCAGTTGCAACCCTGTGCCAG
TGGCGAGCAATGGGAATGGGATGGTGTGCGCTTCTCGCTGTGGCGCTGGGCGCAAGGGCGCAGCAGTAATGACCGCTCCT
GTGTGTTGCTGGTCGAGGCGCAGGGCGAGCGGTTGTTGCTGGCCGGCGACATGGAGGCAGGGGCGGAGCGTGCCTGGCTG
GCGGCAACCGACGCGCCACGCATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCTTCCAGCGAGGGGTTCAT
GCGTGCCACGGCGCCGCGTGGGGTGCTGATATCGCGGGGGCGCAACAATAGTTTTGGGCACCCGCATGCGCAGGTGGTGG
AGCGGTACCGGCGGCATGGGGTGGTGGTGCATGACACGGCGGTGCAGGGCGCTTTGCGGTTGGTGCTGGGTGGGTGGGGG
GAGGTTGAGGGTATGCGGGGGCAGCGGCGGTTCTGGCGGGCTCGGGGGGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(26-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-649)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.889

97.693

0.575
  comA Ralstonia pseudosolanacearum GMI1000

35.455

100

0.37