Detailed information NTG0596947

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: K5F93_RS01130
• Genome accession: NZ_CP081490
• Coordinates: 243435..244928 (-)
• Length: 497 a.a.
• NCBI ID: WP_221810292.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain PS1
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 238435..249928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5F93_RS01115 (K5F93_01115)	-	240486..241412 (-)	927	WP_221810289.1	ABC transporter six-transmembrane domain-containing protein	-
K5F93_RS01120 (K5F93_01120)	-	241526..242104 (+)	579	WP_221810290.1	TetR/AcrR family transcriptional regulator	-
K5F93_RS01125 (K5F93_01125)	-	242216..243430 (+)	1215	WP_221810291.1	aldose 1-epimerase family protein	-
K5F93_RS01130 (K5F93_01130)	comM	243435..244928 (-)	1494	WP_221810292.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
K5F93_RS01135 (K5F93_01135)	-	245103..245363 (-)	261	WP_072451854.1	accessory factor UbiK family protein	-
K5F93_RS01140 (K5F93_01140)	glnK	245780..246118 (+)	339	WP_002555808.1	P-II family nitrogen regulator	-
K5F93_RS01145 (K5F93_01145)	-	246152..247489 (+)	1338	WP_102881269.1	ammonium transporter	-
K5F93_RS01150 (K5F93_01150)	-	247699..248124 (+)	426	WP_102862235.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
K5F93_RS01155 (K5F93_01155)	sutA	248227..248550 (+)	324	WP_007926654.1	transcriptional regulator SutA	-
K5F93_RS01160 (K5F93_01160)	-	248675..249379 (-)	705	WP_221810293.1	HAD family hydrolase	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 53365.32 Da
• Isoelectric Point: 8.3692

>NTDB_id=596947 K5F93_RS01130 WP_221810292.1 243435..244928(-) (comM) [Pseudomonas protegens strain PS1]
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFNFPPRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALALDNLECLGELALSGAVRAVRGVLPAALAARKAGRTLLVPRANAEEACLASGLEVIAVDHL
LEAVAHLNGHVPIAPYISDGLQENHSPYPDLREVQGQLAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIHSVSSHKPLRHWPQRPFRQPHHSASGPALVGGGSKPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIVIARARDRVQFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPEPQP
GDDSACAAARVAQARERQQQRQGCANAHLDLPGLRRHCQLSTADERWLEAACERLNLSLRAAHRLLKVARTLADLEQAAR
INREHLAEALHYRPSTG

Nucleotide

• Length: 1494 bp

>NTDB_id=596947 K5F93_RS01130 WP_221810292.1 243435..244928(-) (comM) [Pseudomonas protegens strain PS1]
ATGTCCCTGGCAATCATCCACAGCCGTGCCCAAGTGGGCGTACAGGCTCCGGCTGTCAGCGTTGAAGTGCACTTGGCCAA
CGGCCTGCCGAGCCTGACCCTGGTCGGGCTGCCGGAAGCAGCAGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCC
TCAACGCCGGATTCAACTTCCCGCCGCGACGCATCACCCTCAACCTCGCTCCGGCGGATTTGCCCAAGGACGGTGGACGA
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAGCGTGCAGGTGCCGGCCCTGGCGCTGGACAACCTCGAATGCCT
GGGTGAGCTGGCCTTGTCCGGCGCGGTGCGAGCGGTGCGCGGTGTGCTCCCGGCCGCGCTGGCGGCACGCAAGGCGGGAC
GCACCCTGCTGGTGCCCCGGGCCAATGCCGAGGAAGCCTGCCTCGCCTCGGGCCTGGAAGTGATCGCCGTAGACCATCTG
CTGGAGGCCGTCGCCCACCTCAACGGCCACGTCCCCATTGCGCCGTACATCAGCGACGGCTTGCAGGAGAATCACTCGCC
CTACCCCGACCTGCGGGAAGTCCAGGGCCAACTGGCCGCCAAGCGTGCCTTGCTGGTCGCTGCCGCCGGCGCCCACAACC
TGCTGTTCAGCGGCCCGCCCGGCACCGGCAAGACCTTGCTGGCCAGTCGCTTGCCCGGTCTGCTGCCACCCTTGCAGGAA
GACGAAGCCCTGGAAGTCGCAGCCATTCACTCGGTGAGCAGCCACAAGCCGCTGCGCCACTGGCCGCAGCGCCCCTTCCG
CCAGCCCCATCACTCGGCATCAGGCCCTGCGCTGGTGGGTGGCGGTTCGAAACCTCGTCCGGGAGAAATCACCCTGGCCC
ATCACGGTGTGTTGTTTCTCGATGAACTGCCGGAGTTCGACCGCAAGGTCCTGGAGGTTCTGCGCGAGCCCATGGAGTCG
GGCCAGATCGTCATCGCGCGCGCCCGCGACCGGGTGCAGTTCCCGGCGCGCTTCCAACTGGTAGCCGCCATGAACCCCTG
CCCCTGTGGCTACCTGGGCGACCCCAACGGACGGTGCCGCTGCACACCGGAACAGATCCAGCGCTATCGCAACAAGCTGT
CCGGCCCCTTGCTCGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAAGCCACCGCCCTGAACCCCGAGCCGCAACCG
GGGGACGACAGTGCCTGCGCCGCCGCTCGGGTGGCGCAAGCTCGCGAGCGGCAACAGCAACGCCAGGGTTGCGCCAATGC
CCATCTCGACCTCCCCGGCCTAAGACGCCATTGCCAGCTATCCACGGCAGACGAACGCTGGCTGGAAGCGGCCTGCGAAC
GCCTGAACCTGTCGCTACGAGCCGCCCACCGCCTGCTGAAGGTGGCCCGGACCCTGGCCGACCTGGAGCAGGCGGCACGG
ATCAACCGCGAGCATCTGGCAGAAGCCCTGCATTACCGGCCAAGCACAGGTTAA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-493)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	56.162	99.598	0.559
comM	Haemophilus influenzae Rd KW20	55.4	100	0.557
comM	Glaesserella parasuis strain SC1401	55	100	0.553
comM	Vibrio cholerae strain A1552	55.354	99.598	0.551
comM	Legionella pneumophila str. Paris	50	100	0.501
comM	Legionella pneumophila strain ERS1305867	50	100	0.501
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.437	100	0.461