Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Cf24236_RS23620 Genome accession   NZ_CP081314
Coordinates   4966694..4968214 (+) Length   506 a.a.
NCBI ID   WP_196014567.1    Uniprot ID   -
Organism   Citrobacter farmeri strain CCRI-24236     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4961694..4973214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cf24236_RS23595 (Cf24236_4711) ilvE 4963249..4964178 (-) 930 WP_195506385.1 branched-chain-amino-acid transaminase -
  Cf24236_RS23600 (Cf24236_4712) ilvM 4964197..4964460 (-) 264 WP_042326055.1 acetolactate synthase 2 small subunit -
  Cf24236_RS23605 (Cf24236_4713) ilvG 4964457..4966103 (-) 1647 WP_196014566.1 acetolactate synthase 2 catalytic subunit -
  Cf24236_RS23610 ilvX 4966106..4966156 (-) 51 WP_195297387.1 peptide IlvX -
  Cf24236_RS23615 ilvL 4966243..4966341 (-) 99 WP_042326053.1 ilv operon leader peptide -
  Cf24236_RS23620 (Cf24236_4714) comM 4966694..4968214 (+) 1521 WP_196014567.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Cf24236_RS23625 (Cf24236_4715) maoP 4968240..4968578 (-) 339 WP_042326051.1 macrodomain Ori organization protein MaoP -
  Cf24236_RS23630 (Cf24236_4716) hdfR 4968698..4969531 (+) 834 WP_216526277.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54847.70 Da        Isoelectric Point: 7.1478

>NTDB_id=595983 Cf24236_RS23620 WP_196014567.1 4966694..4968214(+) (comM) [Citrobacter farmeri strain CCRI-24236]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLDQYELVGELALTGALRGVPGAISSATEAIRAGRCIIVAKENEDEVGLIDGEGCLVADHL
QAVCAFLEGKHGLNHPEVSDGVTCMSSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLASRLNGLLPALSNE
EALESAAILSLINSNSVQKQWKQRPFRAPHHSASLAAMVGGGTIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRSTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ENSITVKQRVIAAQERQHKRQGKLNALLQNREIREHCPLSGEDAQWLEETLIHLGLSIRAWQRLLKVSRTIADLAQAEHI
SRRHLQEAVSYRAIDRLLSHLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=595983 Cf24236_RS23620 WP_196014567.1 4966694..4968214(+) (comM) [Citrobacter farmeri strain CCRI-24236]
ATGTCACTGTCAATTGTTCATACACGCGCTGCGTTGGGGGTAAATGCACCGGCGATTACTATCGAAGTGCATATCAGTAA
CGGTCTACCAGGTTTAACACTGGTGGGATTACCAGAAACAACCGTCAAAGAGGCACGCGATCGGGTACGCAGTGCGATCA
TTAATAGCGGATATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCTGCAGATCTTCCCAAAGAGGGTGGGAGA
TATGATTTACCTATTGCTGTGGCGCTTCTGGTTGCATCTGAGCAGCTTACAACTCATAAACTCGACCAATATGAGTTAGT
GGGAGAATTAGCGCTTACAGGCGCATTACGCGGCGTTCCCGGCGCCATATCCAGTGCGACCGAAGCGATACGCGCGGGAA
GATGCATTATCGTGGCAAAAGAGAACGAAGATGAGGTCGGACTGATTGATGGTGAGGGATGTTTGGTTGCCGATCATCTG
CAAGCCGTCTGCGCCTTCCTGGAAGGAAAGCATGGCCTTAACCATCCAGAAGTCAGCGACGGGGTAACCTGCATGTCTTC
TGACGATCTCAGCGACATTATTGGTCAGGAGCAAGGAAAACGCAGCCTTGAGATCACCGCCGCGGGTGGGCATAACCTGT
TGTTAGTTGGTCCACCGGGTACGGGGAAAACGATGCTTGCCAGCCGCCTTAATGGTCTGTTGCCGGCGTTAAGTAACGAA
GAAGCCCTGGAAAGTGCCGCCATCCTCAGCCTGATCAACTCGAACAGCGTGCAAAAACAATGGAAGCAACGACCTTTCCG
CGCACCACACCACAGTGCATCCCTGGCCGCGATGGTTGGTGGCGGTACGATCCCCGCGCCAGGCGAAATATCTTTAGCAC
ACAACGGAATACTATTTCTTGATGAGCTACCTGAGTTTGAACGACGAACCTTAGATGCCCTACGTGAACCCATCGAGTCT
GGTCAGATCCACCTTTCGCGTACACGCGCTAAGATCACCTATCCTGCGCGCTTTCAATTAGTGGCAGCAATGAATCCCAG
TCCCACAGGGCACTATCAGGGTAACCATAACCGGAGTACACCTGAACAGACATTACGTTATCTTAGTCGACTCTCGGGCC
CCTTTCTGGACCGCTTTGATCTTTCTCTTGAGATCCCTTTACCCCCACCAGGCATACTCAGCCAGCCCGGTGTAAAAGGG
GAAAACAGCATTACAGTAAAACAACGGGTCATAGCCGCGCAGGAACGTCAGCATAAACGCCAGGGCAAACTGAATGCACT
CCTGCAAAACAGGGAGATACGTGAACACTGTCCGTTGTCGGGTGAAGATGCGCAGTGGCTGGAGGAGACGCTCATCCATC
TTGGATTGTCTATACGGGCCTGGCAGCGTTTATTAAAGGTCTCAAGGACCATTGCCGATCTTGCGCAAGCTGAGCATATT
TCGCGACGACACTTGCAGGAAGCGGTCAGCTACCGGGCGATAGATCGACTGCTTTCTCACCTGCAAAAACAACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.792

99.802

0.607
  comM Vibrio campbellii strain DS40M4

59.208

99.802

0.591
  comM Haemophilus influenzae Rd KW20

58.696

100

0.587
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.545

99.407

0.423