Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Cf24236_RS21855 Genome accession   NZ_CP081314
Coordinates   4581893..4582420 (-) Length   175 a.a.
NCBI ID   WP_042321101.1    Uniprot ID   A0A8H9NYF1
Organism   Citrobacter farmeri strain CCRI-24236     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4576893..4587420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cf24236_RS21840 (Cf24236_4355) - 4577598..4577879 (+) 282 WP_195296271.1 YjcB family protein -
  Cf24236_RS21845 (Cf24236_4357) - 4578427..4581144 (+) 2718 WP_420869489.1 cation-transporting P-type ATPase -
  Cf24236_RS21850 (Cf24236_4358) - 4581213..4581644 (-) 432 WP_042321104.1 universal stress protein -
  Cf24236_RS21855 (Cf24236_4359) ssb 4581893..4582420 (-) 528 WP_042321101.1 single-stranded DNA-binding protein SSB1 Machinery gene
  Cf24236_RS21860 (Cf24236_4360) uvrA 4582673..4585495 (+) 2823 WP_216525688.1 excinuclease ABC subunit UvrA -
  Cf24236_RS21865 (Cf24236_4361) - 4585537..4585887 (-) 351 WP_195296270.1 MmcQ/YjbR family DNA-binding protein -
  Cf24236_RS21870 (Cf24236_4362) aphA 4586141..4586854 (-) 714 WP_195505112.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18917.98 Da        Isoelectric Point: 5.2456

>NTDB_id=595980 Cf24236_RS21855 WP_042321101.1 4581893..4582420(-) (ssb) [Citrobacter farmeri strain CCRI-24236]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGSWGQPQQPQGGNQFSGGAQPRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=595980 Cf24236_RS21855 WP_042321101.1 4581893..4582420(-) (ssb) [Citrobacter farmeri strain CCRI-24236]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCTGTCGCCAACATCACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGTTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGCCAGTTGCGTACTCGCAAATGGACCGATCAGTCCGGCGTTGAGAAGTACACCACGGAAGTGGTGGTAAACGTTGG
CGGCACCATGCAAATGTTGGGTGGTCGTCAGGGTGGTGGCGCCCCGGCTGGTGGCCAGCAGCAGCAAGGTAGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGCCTCGCCCGCAGCAGCAGTCAGCACCGGCAGCG
CCGTCTAACGAACCGCCGATGGATTTCGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.432

100

0.766
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.606
  ssb Neisseria meningitidis MC58

47.222

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.486
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.371