Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K3819_RS01980 Genome accession   NZ_CP081200
Coordinates   437396..438460 (+) Length   354 a.a.
NCBI ID   WP_007952389.1    Uniprot ID   J2PGW6
Organism   Pseudomonas sp. 3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432396..443460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3819_RS01970 (K3819_01970) - 433194..434462 (+) 1269 WP_007952395.1 malic enzyme-like NAD(P)-binding protein -
  K3819_RS01975 (K3819_01975) - 434733..437177 (-) 2445 WP_371857705.1 penicillin-binding protein 1A -
  K3819_RS01980 (K3819_01980) comM 437396..438460 (+) 1065 WP_007952389.1 pilus assembly protein PilM Machinery gene
  K3819_RS01985 (K3819_01985) - 438460..439026 (+) 567 WP_064592903.1 PilN domain-containing protein -
  K3819_RS01990 (K3819_01990) pilO 439023..439646 (+) 624 WP_085611135.1 type 4a pilus biogenesis protein PilO -
  K3819_RS01995 (K3819_01995) - 439643..440167 (+) 525 WP_039766425.1 pilus assembly protein PilP -
  K3819_RS02000 (K3819_02000) pilQ 440182..442260 (+) 2079 WP_221398528.1 type IV pilus secretin PilQ Machinery gene
  K3819_RS02005 (K3819_02005) aroK 442265..442783 (+) 519 WP_011332081.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38097.60 Da        Isoelectric Point: 4.6857

>NTDB_id=595590 K3819_RS01980 WP_007952389.1 437396..438460(+) (comM) [Pseudomonas sp. 3-2]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGERYRVEAYAVEPLPASAVVEKNIAELEGVGQALSRVLVKARTGLKTVAV
AVAGSAVITKVIEMDAGLSDDELENQLKIEADQYIPYPLDEVAIDFEVQGVSPRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQDRLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEERLNTPTQVANP
FSDMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=595590 K3819_RS01980 WP_007952389.1 437396..438460(+) (comM) [Pseudomonas sp. 3-2]
GTGCTAGGACTCTTCAATAAAAAGGCCAATACGTTACTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTGCTGGAGCT
GAGCCGTCAGGGTGAACGCTACCGGGTCGAGGCGTATGCGGTGGAGCCGTTGCCGGCGAGTGCCGTGGTCGAAAAGAACA
TCGCCGAACTCGAGGGCGTCGGCCAGGCCCTGTCCCGGGTGCTGGTCAAGGCGCGTACCGGGTTGAAAACCGTGGCGGTG
GCCGTGGCCGGCTCGGCGGTGATCACCAAGGTCATCGAGATGGACGCCGGGCTGTCCGACGATGAACTGGAAAACCAGCT
CAAGATCGAGGCCGATCAATACATTCCCTACCCGCTGGACGAGGTCGCCATTGACTTCGAAGTCCAGGGCGTTTCGCCGC
GCAACCCTGAGCGGGTCAACGTACTGCTGGCCGCCTGTCGCAAGGAAAACGTCGAAGTCCGCGAAGCGGCGCTCGCTCTC
GCCGGGCTGACCGCACGGGTGGTAGATGTAGAGGCGTATGCGCTGGAGCGCTCGTTCGGCCTGCTGGCCACGCAACTGGC
CGCGTCCCAGGATCGGTTGACGGTGGCGGTGGTCGACATCGGTGCCACCATGACCACCCTCAGCGTCCTGCACAACGGCC
GGATCATCTATACCCGCGAACAGCTGTTCGGCGGTCGACAGCTGACCGAGGAAATCCAGCGCCGTTATGGCCTCACCCTT
GAACAGGCGGGACTTGCCAAGAAGCAGGGCGGCCTGCCGGACGATTACGTCAGCGAGGTGCTGCAGCCATTTCGCGAGGC
GCTGGTGCAGCAGGTGTCGCGCTCCCTGCAGTTCTTTTTCGCCTCCGGCCAGTACAACGCTGTCGACCACATTCTGCTGG
CCGGCGGCACGGCGTCGGTGCCCGGCCTCGACCGGCTGATCGAAGAGCGCCTGAACACCCCGACCCAGGTTGCCAACCCG
TTTTCCGACATGGCCTTGAGCAGTAAGGTCAACGCCGGGGCTTTGGCGAGCGATGCGCCGGCCCTGATGATTGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2PGW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

53.955

100

0.54
  pilM Legionella pneumophila strain ERS1305867

49.577

100

0.497