Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I876_RS19000 Genome accession   NC_021717
Coordinates   4356140..4357654 (+) Length   504 a.a.
NCBI ID   WP_020744548.1    Uniprot ID   -
Organism   Alteromonas mediterranea U7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4351140..4362654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I876_RS18985 (I876_19170) ilvA 4351442..4352989 (-) 1548 WP_012518728.1 threonine ammonia-lyase, biosynthetic -
  I876_RS18990 (I876_19175) ilvD 4352989..4354839 (-) 1851 WP_020744546.1 dihydroxy-acid dehydratase -
  I876_RS18995 (I876_19180) - 4355268..4355885 (+) 618 WP_012518726.1 trimeric intracellular cation channel family protein -
  I876_RS19000 (I876_19185) comM 4356140..4357654 (+) 1515 WP_020744548.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I876_RS19005 (I876_19190) ilvY 4357674..4358546 (-) 873 WP_020744549.1 HTH-type transcriptional activator IlvY -
  I876_RS19010 (I876_19195) ilvC 4358704..4360182 (+) 1479 WP_020744550.1 ketol-acid reductoisomerase -
  I876_RS19015 (I876_19200) - 4360333..4361583 (-) 1251 WP_020744551.1 multidrug effflux MFS transporter -
  I876_RS19020 (I876_19205) - 4361724..4361978 (-) 255 Protein_3763 alpha/beta hydrolase family protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54160.67 Da        Isoelectric Point: 5.7052

>NTDB_id=59553 I876_RS19000 WP_020744548.1 4356140..4357654(+) (comM) [Alteromonas mediterranea U7]
MGMAVVKTFAGQGVTAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDTSLLNIAFVGELALNGEIKPVNGLIPVVMTAANEDIALVYPGDNDVEAALVSHATRFPAFDL
LSVYEHLTGNKKLAKGQPFASHSPNTVQTGWDDIIGQEQAKRALIIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGETLHAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERGNRPD
DSLHDMRERVIAARQKQESRQGKPNGALHAGELADICLLDDADLLFLQAAAKQLNLSMRVFHRTLKVARTIADLEEENAV
SRAHIAEALGYRALDNLIKQLSAS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=59553 I876_RS19000 WP_020744548.1 4356140..4357654(+) (comM) [Alteromonas mediterranea U7]
ATGGGCATGGCTGTGGTTAAAACTTTTGCAGGCCAAGGCGTTACTGCGCCAGAGGTGAGCGTAGAAATTCATTTGGCTAA
CGGCTTACCCGCCTTTCAACTAGTGGGCATGGCTGAAACCAGTGTAAAGGAAGCCCGTGAGCGTGTGCGCAGCGCCCTTA
TCAACAGTGGCTTTGAATTTCCTGCCAAACGAATAACCGTTAACTTAGCTCCCGCTGATATTCCTAAGTTCGGCGGGCGA
TTCGACCTTCCCATCGCCGTAGGTATACTCGCCGCTTCCGGCTATATTTCAGATACAAGCTTATTAAATATTGCCTTTGT
GGGCGAGCTTGCTTTAAACGGAGAAATAAAGCCGGTTAACGGCCTTATTCCCGTCGTAATGACAGCCGCAAACGAAGATA
TTGCTTTGGTTTACCCTGGTGACAATGACGTTGAAGCCGCACTCGTATCCCACGCTACGCGCTTTCCCGCGTTTGATTTA
CTGTCTGTTTATGAACACCTTACTGGTAATAAGAAATTGGCAAAGGGGCAGCCTTTTGCTTCACATTCGCCTAATACGGT
ACAAACAGGTTGGGATGATATTATCGGGCAGGAACAGGCTAAACGGGCGTTAATCATCGCCGCTAGTGGTGCGCATAATC
TACTAATGGTGGGGCCTCCCGGCACGGGAAAGAGCCTGCTAGCTAGCCGTATGCTCTCGCTACTACCAGATATGAGCGAA
GAAGAGGCCCTTGAAGTAGCCGCCATTCATTCGGTAAAAGGTGAAACCTTACACGCCGAGCGCTTTTTAACGCGTCATTT
GCGCTCCCCCCATCATACCAGTTCTGCTGTGGCGCTTACTGGTGGCGGTTCTAACCCGGTGCCGGGCGAAATATCGCTGG
CCCATAACGGTATTTTGTTTTTAGACGAATTGCCTGAATTCGGACGCAAAGCGCTGGACGTATTGCGTGAGCCCCTTGAA
ACTGGCGATGTACACTTGTCGAGAGCTTCAGGAAGCGCTACGTACCCGGCTAATTTTCAGTTAGTAGCTGCGATGAACCC
AAGCCCGACGGGCGATATTGATGATAATCGCCTGACACCACAGCAGCAGCTTAATTACTTAAACCGTTTGTCTGGCCCGC
TGCTAGATAGAATAGATATACAAGTCGAGGTGCCTAGACTACCAGACTACGACTTGCCAGAGCGGGGCAATAGACCTGAC
GACTCGTTACATGACATGCGGGAAAGGGTGATAGCTGCACGGCAAAAACAAGAGTCTCGACAAGGCAAACCCAATGGCGC
TTTACACGCGGGTGAACTTGCCGACATCTGTTTGCTAGATGACGCAGATCTCCTCTTTTTACAGGCAGCTGCGAAACAAC
TTAATTTATCTATGCGCGTATTTCACCGCACGCTAAAAGTGGCTAGAACTATTGCCGACCTTGAAGAAGAAAACGCCGTA
TCCAGGGCTCATATCGCGGAAGCGCTGGGTTATCGAGCTCTCGATAACCTTATAAAGCAGCTCAGTGCTAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.059

100

0.542
  comM Vibrio campbellii strain DS40M4

53.267

100

0.534
  comM Haemophilus influenzae Rd KW20

51.373

100

0.52
  comM Glaesserella parasuis strain SC1401

51.186

100

0.514
  comM Legionella pneumophila str. Paris

45.968

98.413

0.452
  comM Legionella pneumophila strain ERS1305867

45.968

98.413

0.452
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.604

100

0.429

Multiple sequence alignment