Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | K6J66_RS03500 | Genome accession | NZ_AP018771 |
| Coordinates | 697198..698205 (+) | Length | 335 a.a. |
| NCBI ID | WP_005649027.1 | Uniprot ID | Q4QNM6 |
| Organism | Haemophilus influenzae strain CHBN-II-8 isolate 10H27 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 692198..703205
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J66_RS03475 (CHBNII8_06610) | aspS | 692881..694647 (+) | 1767 | WP_038439250.1 | aspartate--tRNA ligase | - |
| K6J66_RS03480 (CHBNII8_06620) | nudB | 694669..695142 (+) | 474 | WP_038439249.1 | dihydroneopterin triphosphate diphosphatase | - |
| K6J66_RS03485 (CHBNII8_06630) | - | 695154..695894 (+) | 741 | WP_005649034.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| K6J66_RS03490 (CHBNII8_06640) | ruvC | 695941..696513 (+) | 573 | WP_005666663.1 | crossover junction endodeoxyribonuclease RuvC | - |
| K6J66_RS03495 (CHBNII8_06650) | ruvA | 696576..697190 (+) | 615 | WP_005659994.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| K6J66_RS03500 (CHBNII8_06660) | ruvB | 697198..698205 (+) | 1008 | WP_005649027.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| K6J66_RS03505 (CHBNII8_06670) | - | 698257..698544 (-) | 288 | WP_005659998.1 | DUF5339 domain-containing protein | - |
| K6J66_RS03510 (CHBNII8_06680) | xerD | 698717..699610 (-) | 894 | WP_005649023.1 | site-specific tyrosine recombinase XerD | - |
| K6J66_RS03515 (CHBNII8_06690) | - | 699641..700807 (-) | 1167 | WP_038439245.1 | 3-phenylpropionate MFS transporter | - |
| K6J66_RS03520 (CHBNII8_06700) | proC | 700807..701622 (-) | 816 | WP_038439239.1 | pyrroline-5-carboxylate reductase | - |
| K6J66_RS03525 (CHBNII8_06710) | rdgC | 701688..702596 (+) | 909 | WP_038439238.1 | recombination-associated protein RdgC | - |
| K6J66_RS03530 (CHBNII8_06720) | ruvX | 702646..703065 (-) | 420 | WP_005648994.1 | Holliday junction resolvase RuvX | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37076.41 Da Isoelectric Point: 4.7793
>NTDB_id=59545 K6J66_RS03500 WP_005649027.1 697198..698205(+) (ruvB) [Haemophilus influenzae strain CHBN-II-8 isolate 10H27]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD
Nucleotide
Download Length: 1008 bp
>NTDB_id=59545 K6J66_RS03500 WP_005649027.1 697198..698205(+) (ruvB) [Haemophilus influenzae strain CHBN-II-8 isolate 10H27]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACATCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTAACCAATCTTGAACCGCA
TGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGCGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGACGGTGGGCCTGTGGGGCTAGATAATCTTGCCGCTGCGATCGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGTCGTATTGCA
ACATCACAAACTTATCGCCATTTTGGTTTGCAGAAATTATCAGACTAG
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACATCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTAACCAATCTTGAACCGCA
TGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGCGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGACGGTGGGCCTGTGGGGCTAGATAATCTTGCCGCTGCGATCGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGTCGTATTGCA
ACATCACAAACTTATCGCCATTTTGGTTTGCAGAAATTATCAGACTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
62.385 |
97.612 |
0.609 |
| ruvB | Streptococcus pneumoniae TIGR4 |
57.975 |
97.313 |
0.564 |
| ruvB | Streptococcus pneumoniae R6 |
57.975 |
97.313 |
0.564 |
| ruvB | Streptococcus pneumoniae D39 |
57.975 |
97.313 |
0.564 |
| ruvB | Helicobacter pylori 26695 |
54.633 |
93.433 |
0.51 |
| ruvB | Synechocystis sp. PCC 6803 |
55.016 |
92.239 |
0.507 |