Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J66_RS03495 Genome accession   NZ_AP018771
Coordinates   696576..697190 (+) Length   204 a.a.
NCBI ID   WP_005659994.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-8 isolate 10H27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 691576..702190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J66_RS03470 (CHBNII8_06600) - 692143..692661 (-) 519 WP_038439252.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6J66_RS03475 (CHBNII8_06610) aspS 692881..694647 (+) 1767 WP_038439250.1 aspartate--tRNA ligase -
  K6J66_RS03480 (CHBNII8_06620) nudB 694669..695142 (+) 474 WP_038439249.1 dihydroneopterin triphosphate diphosphatase -
  K6J66_RS03485 (CHBNII8_06630) - 695154..695894 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J66_RS03490 (CHBNII8_06640) ruvC 695941..696513 (+) 573 WP_005666663.1 crossover junction endodeoxyribonuclease RuvC -
  K6J66_RS03495 (CHBNII8_06650) ruvA 696576..697190 (+) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J66_RS03500 (CHBNII8_06660) ruvB 697198..698205 (+) 1008 WP_005649027.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J66_RS03505 (CHBNII8_06670) - 698257..698544 (-) 288 WP_005659998.1 DUF5339 domain-containing protein -
  K6J66_RS03510 (CHBNII8_06680) xerD 698717..699610 (-) 894 WP_005649023.1 site-specific tyrosine recombinase XerD -
  K6J66_RS03515 (CHBNII8_06690) - 699641..700807 (-) 1167 WP_038439245.1 3-phenylpropionate MFS transporter -
  K6J66_RS03520 (CHBNII8_06700) proC 700807..701622 (-) 816 WP_038439239.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22547.27 Da        Isoelectric Point: 6.5030

>NTDB_id=59544 K6J66_RS03495 WP_005659994.1 696576..697190(+) (ruvA) [Haemophilus influenzae strain CHBN-II-8 isolate 10H27]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=59544 K6J66_RS03495 WP_005659994.1 696576..697190(+) (ruvA) [Haemophilus influenzae strain CHBN-II-8 isolate 10H27]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACTACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment