Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K4H25_RS01645 Genome accession   NZ_CP081149
Coordinates   344672..346165 (-) Length   497 a.a.
NCBI ID   WP_221021736.1    Uniprot ID   -
Organism   Deefgea piscis strain D13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 339672..351165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4H25_RS01630 (K4H25_01630) - 340071..340904 (-) 834 WP_221021733.1 transporter substrate-binding domain-containing protein -
  K4H25_RS17085 - 341532..341792 (+) 261 Protein_324 methyl-accepting chemotaxis protein -
  K4H25_RS17090 - 341838..342200 (+) 363 WP_255588182.1 CZB domain-containing protein -
  K4H25_RS01640 (K4H25_01640) parE 342404..344377 (-) 1974 WP_221021735.1 DNA topoisomerase IV subunit B -
  K4H25_RS01645 (K4H25_01645) comM 344672..346165 (-) 1494 WP_221021736.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K4H25_RS01650 (K4H25_01650) - 346223..347218 (+) 996 WP_221021737.1 sensor histidine kinase -
  K4H25_RS01655 (K4H25_01655) - 347221..347991 (+) 771 WP_221021738.1 LytTR family DNA-binding domain-containing protein -
  K4H25_RS01660 (K4H25_01660) - 347981..348397 (+) 417 WP_255587906.1 DUF2721 domain-containing protein -
  K4H25_RS01665 (K4H25_01665) - 348429..348830 (-) 402 WP_221021739.1 diacylglycerol kinase -
  K4H25_RS01670 (K4H25_01670) - 348814..349548 (-) 735 WP_221021740.1 BPSS1780 family membrane protein -
  K4H25_RS01675 (K4H25_01675) - 349693..350883 (-) 1191 WP_221021741.1 acetate/propionate family kinase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52953.88 Da        Isoelectric Point: 7.5728

>NTDB_id=595352 K4H25_RS01645 WP_221021736.1 344672..346165(-) (comM) [Deefgea piscis strain D13]
MSLAVLYSRALDGLSAQSVTVEVHLANGLPAFNLVGLADTEVRESRERVRAALQVAGFEFPNRRITVNLAPADLPKGAGH
YDLAIAVGILAASGQLPCEHLADYEFAGELGLTGQLRSVRGGLALAMAARDAQRTLIISASSSHEAALIQNAAILSAAHL
LEVCHHLSGAQPLPTALAPMDRANPIYPDLADVKGQSAARRGLEVAAAGNHSILLIGPPGTGKSMLAQRLPGLLPPLLEN
EALEAAAIQSLGQNGLDLRNVGQRPFRSPHHTASSVALVGGGSIPQPGEISLAHHGVLFLDELPEFDRKVLEVLREPLES
GKIHISRAARQAEFPARFQLVAAMNPCPCGYLGHLKKACRCTPEQVLRYRGRISGPLLDRIDMVVEVPAIPDTVLLAKGQ
SEGSLLVRERVCEARERQLARQGHNNSTLLGAAMDTHCQTDAAGLAMLQNAIQKLAWSARAYHRVLRVARTIADLAGSEA
ILTPHLAEAIQYRRGIE

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=595352 K4H25_RS01645 WP_221021736.1 344672..346165(-) (comM) [Deefgea piscis strain D13]
ATGTCGCTTGCCGTTTTGTATTCTCGAGCATTAGATGGCTTATCTGCGCAATCGGTTACTGTTGAGGTTCATCTAGCCAA
TGGCTTGCCCGCATTTAATTTGGTGGGGCTGGCTGATACTGAAGTTCGTGAATCTCGAGAACGAGTTCGAGCGGCATTGC
AAGTGGCTGGTTTTGAATTTCCTAATCGCCGAATTACCGTAAATTTAGCTCCTGCCGATTTGCCCAAAGGGGCAGGGCAT
TATGATTTGGCGATTGCGGTGGGTATATTAGCTGCGAGTGGGCAATTACCCTGCGAGCATTTAGCTGATTATGAATTTGC
GGGTGAATTAGGCTTAACTGGGCAATTACGTTCAGTACGAGGTGGCTTGGCATTAGCCATGGCGGCTCGTGATGCGCAGC
GAACATTGATTATTAGTGCCAGTAGCAGTCATGAAGCGGCATTAATTCAAAATGCAGCGATATTGTCTGCAGCGCATTTA
CTTGAAGTTTGCCACCATCTTAGTGGAGCTCAACCATTACCAACGGCTTTAGCGCCAATGGATAGGGCAAATCCTATTTA
TCCTGATTTAGCCGATGTAAAAGGGCAGTCTGCCGCTCGGCGTGGTCTTGAGGTGGCGGCAGCGGGCAATCATTCTATAT
TACTGATTGGCCCACCAGGAACCGGTAAATCAATGTTGGCGCAGCGGCTACCGGGTTTATTACCGCCATTATTGGAAAAT
GAAGCACTAGAGGCGGCAGCGATTCAGTCCTTAGGGCAAAATGGGCTTGATCTGCGTAATGTCGGTCAGCGCCCATTTCG
TAGCCCGCATCATACGGCGTCCAGCGTTGCTTTAGTGGGTGGTGGCAGTATTCCGCAACCTGGAGAGATCTCACTGGCGC
ATCATGGGGTTCTGTTTTTAGATGAATTACCCGAATTTGATCGAAAAGTTTTAGAGGTATTGCGAGAGCCACTTGAGAGT
GGAAAAATTCATATTTCTCGCGCAGCACGGCAAGCTGAATTTCCGGCACGGTTTCAACTGGTGGCGGCGATGAATCCCTG
TCCTTGTGGATATTTAGGGCATCTGAAGAAAGCATGTCGTTGCACGCCAGAACAAGTGCTGCGCTATCGAGGCCGCATTT
CTGGACCATTACTGGATCGTATTGATATGGTGGTCGAAGTACCGGCGATTCCTGATACGGTGTTATTGGCCAAAGGGCAA
AGTGAAGGCAGTTTATTGGTGCGTGAAAGGGTTTGTGAAGCCCGTGAGCGGCAGCTAGCACGGCAAGGTCATAATAATTC
TACTTTACTCGGCGCGGCAATGGATACCCATTGCCAAACGGACGCCGCAGGTTTGGCCATGTTGCAAAATGCGATTCAAA
AATTAGCCTGGTCTGCGCGTGCTTATCATCGAGTATTGCGCGTAGCCCGAACGATTGCTGATTTAGCTGGTAGTGAGGCG
ATTTTAACGCCGCATCTGGCTGAAGCAATCCAATATCGCCGGGGTATTGAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.929

99.598

0.527
  comM Haemophilus influenzae Rd KW20

52.104

100

0.523
  comM Vibrio campbellii strain DS40M4

52.121

99.598

0.519
  comM Glaesserella parasuis strain SC1401

50.701

100

0.509
  comM Legionella pneumophila str. Paris

50.1

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.1

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.461