Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   HLV54_RS04680 Genome accession   NZ_CP080770
Coordinates   982699..983685 (+) Length   328 a.a.
NCBI ID   WP_000959298.1    Uniprot ID   A0A6A9GY92
Organism   Staphylococcus aureus strain HL23187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 977699..988685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV54_RS04660 (HLV54_000932) - 978137..979783 (+) 1647 WP_000277723.1 IS1182-like element ISSau3 family transposase -
  HLV54_RS04665 (HLV54_000933) trpS 979809..980798 (-) 990 WP_000448937.1 tryptophan--tRNA ligase -
  HLV54_RS04670 (HLV54_000934) spxA 981093..981488 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  HLV54_RS04675 (HLV54_000935) mecA 981859..982578 (+) 720 WP_001217728.1 adaptor protein MecA -
  HLV54_RS04680 (HLV54_000936) coiA 982699..983685 (+) 987 WP_000959298.1 competence protein CoiA Machinery gene
  HLV54_RS04685 (HLV54_000937) pepF 983733..985541 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  HLV54_RS04690 (HLV54_000938) yjbH 986001..986807 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  HLV54_RS04695 (HLV54_000939) - 986830..987195 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  HLV54_RS04700 (HLV54_000940) - 987299..987892 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  HLV54_RS04705 (HLV54_000941) - 988078..988425 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38745.27 Da        Isoelectric Point: 9.6529

>NTDB_id=594856 HLV54_RS04680 WP_000959298.1 982699..983685(+) (coiA) [Staphylococcus aureus strain HL23187]
MLVALNGEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLESDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=594856 HLV54_RS04680 WP_000959298.1 982699..983685(+) (coiA) [Staphylococcus aureus strain HL23187]
ATGTTAGTAGCTTTAAATGGAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGAAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9GY92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.646

100

0.966
  coiA Staphylococcus aureus N315

96.646

100

0.966