Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K2O51_RS13910 Genome accession   NZ_CP080767
Coordinates   316986..318527 (-) Length   513 a.a.
NCBI ID   WP_011296478.1    Uniprot ID   -
Organism   Cupriavidus pinatubonensis strain HN-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 311986..323527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2O51_RS13885 (K2O51_13885) - 314137..314673 (-) 537 WP_011296474.1 TlpA disulfide reductase family protein -
  K2O51_RS13890 (K2O51_13890) - 314792..315304 (-) 513 WP_220631635.1 thioredoxin family protein -
  K2O51_RS13895 (K2O51_13895) - 315493..316032 (+) 540 WP_235679824.1 hypothetical protein -
  K2O51_RS13900 (K2O51_13900) - 316068..316712 (+) 645 WP_140949331.1 LysE family transporter -
  K2O51_RS13905 (K2O51_13905) - 316796..316969 (+) 174 WP_166486975.1 hypothetical protein -
  K2O51_RS13910 (K2O51_13910) comM 316986..318527 (-) 1542 WP_011296478.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K2O51_RS13915 (K2O51_13915) - 318619..318897 (-) 279 WP_041679795.1 accessory factor UbiK family protein -
  K2O51_RS13920 (K2O51_13920) - 319278..320075 (+) 798 WP_011296480.1 TorF family putative porin -
  K2O51_RS13925 (K2O51_13925) - 320127..320465 (+) 339 WP_011296481.1 P-II family nitrogen regulator -
  K2O51_RS13930 (K2O51_13930) amt 320492..322033 (+) 1542 WP_011296482.1 ammonium transporter -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 54814.77 Da        Isoelectric Point: 8.5116

>NTDB_id=594825 K2O51_RS13910 WP_011296478.1 316986..318527(-) (comM) [Cupriavidus pinatubonensis strain HN-2]
MSLAVLHSRALTGIEAPPVRVETHLANGLPVFTIVGLADTGVRESRERVRAAIINSGFEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQIPSAEFDQYEFAAELSLSGDLRPVRGALAMAMRLARENAARQVSGGNPRAFLVAAGNGAEAALIE
DLTVHSGTTLREVCAHFTPPHDRRLARAVPAALSRVPEPGPDLRDVRGQAQARRAMEVAAAGQHSALLVGPPGTGKSMLA
QRLPGLLPPMSLDEALESAAVLSLTPGGFKPSRWGVRPCRAPHHTASGPAMVGGGGNPRPGEISLAHHGVLFLDELPEFD
RKVLEVLREPLESGRITIARAAGHADFPACFQFVAAMNPCPCGYLGHPERACRCTPDQIRRYQSKISGPLLDRIDLQIEV
PAQDQGEMLDGPAGESSEVVRARVLAARERQLARQGKPNSDLSGREIDKHCPLEPTAQALLRGAMARLAWSARSYFRVLK
VARTIADLEGAEVLTTAHVGEAIQYRRALRTPG

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=594825 K2O51_RS13910 WP_011296478.1 316986..318527(-) (comM) [Cupriavidus pinatubonensis strain HN-2]
ATGAGCCTCGCCGTCCTGCATAGCCGCGCGCTCACCGGCATCGAAGCGCCGCCCGTGCGCGTCGAAACCCATCTGGCCAA
CGGCCTCCCCGTCTTCACCATCGTCGGCCTGGCCGACACCGGCGTACGCGAAAGCCGCGAACGCGTACGTGCCGCCATCA
TCAATAGCGGCTTTGAATTCCCGAACCGCCGCATCACCGTCAATCTGGCGCCAGCGGACTTGCCGAAGGAGTCCGGGCGA
TTCGACCTGGCCATTGCGCTGGGCATCCTGGCGGCGAGCGGCCAGATTCCCTCCGCCGAGTTCGATCAGTACGAGTTCGC
CGCCGAACTGTCGCTGTCCGGCGACCTGCGCCCGGTGCGCGGCGCGCTGGCGATGGCCATGCGCCTGGCGCGCGAAAACG
CCGCGCGGCAGGTCTCCGGCGGCAACCCTCGCGCGTTTCTGGTGGCGGCAGGCAACGGGGCCGAAGCGGCATTGATCGAA
GACCTGACCGTCCACAGCGGCACCACGCTGCGCGAGGTCTGCGCCCATTTCACGCCACCGCACGACCGTCGGCTCGCCCG
CGCCGTACCGGCCGCGCTCTCGCGGGTGCCGGAGCCCGGGCCGGACCTGCGCGACGTACGTGGCCAGGCGCAGGCGCGGC
GTGCCATGGAAGTGGCCGCCGCCGGCCAGCATTCGGCATTGCTCGTTGGACCTCCCGGCACCGGCAAGTCGATGCTGGCT
CAGCGGCTGCCGGGGCTGCTGCCGCCCATGTCGCTCGATGAAGCGCTCGAGTCAGCCGCCGTGCTCAGCCTGACGCCGGG
CGGCTTCAAGCCGTCGCGATGGGGCGTGCGGCCGTGCCGGGCGCCTCACCACACCGCTTCGGGGCCGGCCATGGTGGGCG
GCGGCGGGAATCCTCGCCCCGGCGAGATCTCGCTGGCCCACCACGGCGTGCTATTCCTCGACGAATTGCCGGAGTTCGAC
CGAAAGGTGCTGGAGGTGCTACGCGAGCCGCTGGAATCTGGCCGTATTACCATCGCACGCGCCGCAGGCCACGCCGACTT
CCCGGCGTGCTTCCAGTTCGTGGCGGCCATGAATCCCTGCCCTTGCGGCTATCTCGGGCACCCCGAACGCGCGTGCCGCT
GCACGCCGGACCAGATCCGGCGCTACCAGTCGAAGATATCGGGGCCGCTACTGGACCGGATCGACCTGCAGATCGAAGTA
CCGGCCCAGGACCAGGGCGAGATGCTGGACGGGCCCGCGGGCGAATCCAGCGAAGTCGTGCGCGCACGGGTGCTGGCGGC
GCGCGAACGCCAGCTTGCGCGGCAGGGCAAACCCAACAGCGACCTGTCCGGCCGTGAGATCGACAAGCACTGCCCGCTGG
AACCGACCGCCCAGGCCTTGCTGCGCGGGGCCATGGCGCGGCTGGCATGGTCGGCGCGCTCTTACTTCCGGGTGCTCAAG
GTGGCCCGCACGATTGCGGATCTGGAAGGTGCTGAAGTCCTGACCACCGCGCACGTGGGCGAAGCGATCCAATACCGGCG
CGCCTTGCGCACGCCGGGATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.452

98.83

0.528
  comM Vibrio campbellii strain DS40M4

51.479

98.83

0.509
  comM Haemophilus influenzae Rd KW20

48.928

100

0.489
  comM Legionella pneumophila strain ERS1305867

47.801

100

0.487
  comM Legionella pneumophila str. Paris

47.801

100

0.487
  comM Glaesserella parasuis strain SC1401

47.937

99.22

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.141

99.805

0.441