Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M6G44_RS07915 Genome accession   NZ_CP097377
Coordinates   1701417..1702571 (-) Length   384 a.a.
NCBI ID   WP_005618188.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain GD2107     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1696417..1707571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G44_RS07895 (M6G44_07895) secE 1696793..1697206 (-) 414 WP_005602526.1 preprotein translocase subunit SecE -
  M6G44_RS07900 (M6G44_07900) - 1697509..1697781 (+) 273 WP_005599206.1 PTS sugar transporter subunit IIB -
  M6G44_RS07905 (M6G44_07905) - 1697790..1699145 (+) 1356 WP_005602524.1 PTS ascorbate transporter subunit IIC -
  M6G44_RS07910 (M6G44_07910) - 1699367..1701373 (+) 2007 WP_012478577.1 oligopeptide transporter, OPT family -
  M6G44_RS07915 (M6G44_07915) dprA 1701417..1702571 (-) 1155 WP_005618188.1 DNA-processing protein DprA Machinery gene
  M6G44_RS07920 (M6G44_07920) def 1702757..1703269 (+) 513 WP_005599196.1 peptide deformylase -
  M6G44_RS07925 (M6G44_07925) rfaD 1703409..1704335 (+) 927 WP_005618185.1 ADP-glyceromanno-heptose 6-epimerase -
  M6G44_RS07930 (M6G44_07930) - 1704396..1705646 (-) 1251 WP_005618183.1 porin family protein -
  M6G44_RS07935 (M6G44_07935) - 1705948..1706382 (-) 435 WP_005599190.1 factor H binding protein domain-containing protein -
  M6G44_RS07940 (M6G44_07940) - 1706416..1706604 (+) 189 WP_005618181.1 hypothetical protein -
  M6G44_RS07945 (M6G44_07945) - 1706745..1707440 (-) 696 WP_005616111.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42871.08 Da        Isoelectric Point: 5.2415

>NTDB_id=594810 M6G44_RS07915 WP_005618188.1 1701417..1702571(-) (dprA) [Actinobacillus pleuropneumoniae strain GD2107]
MSQADLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIDNALTWAERPNQHLLSLFD
EEYPFLLRQISIAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFSEQLVKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATLNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHRLIKEGAVLTETIEDILQAIQYQLPDQPWQQALFEPPQAVENAQFFTKADVPNKVN
HLAKKLPELTDCQQQIVAHVSLEPISIDDLAKATALEVDTLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=594810 M6G44_RS07915 WP_005618188.1 1701417..1702571(-) (dprA) [Actinobacillus pleuropneumoniae strain GD2107]
ATGTCTCAGGCTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGCATTGCTCGTCTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATCGGTTGGAACGAGAAACAGATTCAACGCTGGT
TCAATCCGGAAATGCGTTGGATTGATAATGCTCTCACGTGGGCGGAGCGGCCGAATCAACACTTATTGAGCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGTATCGCACCGCCGGTGTTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGTCGAGACTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTAGCGAGCAAT
TGGTTAAACATCATTTGGCGGTTACTAGCGGACTTGCAATCGGCATAGACGGTTTTTGCCATCAGCGAGCGGTAGCGGAA
CAGGGTATTACGATTGCTGTGTTGGGCAGCGGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAGCAAAT
TGTCGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAAAATTTCCCTCGTCGTAATC
GCATTATCAGCGGTTTGTCACTCGGTACGTTAGTGGTGGAAGCCACATTAAATAGCGGTTCGCTGATTACCGCTCGTTAT
GCGTTGGAACAAGGGCGAGAAGTGTTTGCGTTACCCAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAGACTGAT
CAAAGAAGGGGCGGTTTTAACCGAAACGATAGAGGATATTTTACAGGCAATTCAATATCAACTGCCGGATCAGCCTTGGC
AACAGGCTCTGTTTGAACCGCCACAAGCGGTTGAAAACGCACAATTTTTTACAAAAGCAGATGTGCCGAATAAGGTCAAT
CATCTTGCAAAAAAATTGCCGGAATTGACCGATTGTCAGCAACAAATTGTGGCGCATGTTAGTCTTGAACCGATTTCGAT
TGACGATTTGGCGAAAGCGACCGCATTGGAAGTGGATACACTATTGGTTGAATTACTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAGGTAAGCGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)

DprA winged helix domain (WHD_DprA)

(325-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.879

98.698

0.729
  dprA Vibrio campbellii strain DS40M4

46.982

99.219

0.466
  dprA Haemophilus influenzae Rd KW20

49.28

90.365

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.119

100

0.424
  dprA Vibrio cholerae strain A1552

42.119

100

0.424
  dprA Legionella pneumophila strain ERS1305867

37.076

99.74

0.37