Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   M6G44_RS01590 Genome accession   NZ_CP097377
Coordinates   323185..323790 (+) Length   201 a.a.
NCBI ID   WP_005607004.1    Uniprot ID   B3H0C5
Organism   Actinobacillus pleuropneumoniae strain GD2107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 318185..328790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G44_RS01570 (M6G44_01570) potA 319779..320894 (+) 1116 WP_005606999.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -
  M6G44_RS01575 (M6G44_01575) potB 320881..321747 (+) 867 WP_005603539.1 spermidine/putrescine ABC transporter permease PotB -
  M6G44_RS01580 (M6G44_01580) potC 321747..322514 (+) 768 WP_012478315.1 spermidine/putrescine ABC transporter permease PotC -
  M6G44_RS01585 (M6G44_01585) - 322660..323184 (+) 525 WP_005619921.1 YniB family protein -
  M6G44_RS01590 (M6G44_01590) ruvA 323185..323790 (+) 606 WP_005607004.1 Holliday junction branch migration protein RuvA Machinery gene
  M6G44_RS01595 (M6G44_01595) ruvB 323809..324813 (+) 1005 WP_005607006.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  M6G44_RS01600 (M6G44_01600) ubiG 324870..325574 (-) 705 WP_005616730.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  M6G44_RS01605 (M6G44_01605) gyrA 325754..328444 (+) 2691 WP_249849376.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22102.64 Da        Isoelectric Point: 6.8546

>NTDB_id=594775 M6G44_RS01590 WP_005607004.1 323185..323790(+) (ruvA) [Actinobacillus pleuropneumoniae strain GD2107]
MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQIGEEATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNG
VGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKTAERLLVELKGKFKGVAQSDFFEEHSVETIVATHSHDPADE
ARDALVALGYKLADAEKMIKKVNKAGATSEQLIREALKASL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=594775 M6G44_RS01590 WP_005607004.1 323185..323790(+) (ruvA) [Actinobacillus pleuropneumoniae strain GD2107]
ATGATCGGAAGATTACATGGTAAAATTATTGAAAAACAACCACCTGAAATGGTAATTGATGTTCAAGGTGTCGGATATGA
AGTGCTATTGCCGATGACGAGCTTTTACAGTTTGCCGCAAATCGGTGAAGAAGCCACAATCTTTACGCATTTAGTCGTAC
GTGAAGATGCGCATTTATTATTTGGTTTTGCACAAAAGCAAGACAGAACGTTATTTCGTGAATTAATTAAAACCAACGGT
GTCGGGCCTAAATTAGCCCTTGCGATTTTATCGGCGATGTCGGTTTCACAATTTGCGAATGCGGTAGAACATGAAGAATT
AGCCAAATTAACTAAAATCCCGGGCATTGGGCGTAAGACAGCCGAGCGTTTATTAGTAGAACTCAAAGGCAAATTCAAAG
GTGTGGCACAAAGTGATTTCTTTGAAGAACATTCGGTTGAAACGATTGTTGCAACACATTCACACGATCCGGCAGATGAA
GCCCGTGATGCTTTAGTAGCGTTAGGCTATAAACTCGCTGATGCTGAGAAGATGATTAAGAAAGTGAATAAAGCGGGTGC
AACCAGCGAACAATTAATTCGTGAAGCATTAAAAGCCTCTCTTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(157-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3H0C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.19

100

0.378
  ruvA Streptococcus pneumoniae TIGR4

36.869

98.507

0.363