Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K2L43_RS01010 Genome accession   NZ_CP080761
Coordinates   228157..229695 (-) Length   512 a.a.
NCBI ID   WP_012655283.1    Uniprot ID   A0A2S4KK06
Organism   Diaphorobacter sp. MNS-0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 223157..234695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2L43_RS00990 (K2L43_00990) - 223599..224378 (+) 780 WP_220638320.1 ABC transporter ATP-binding protein -
  K2L43_RS00995 (K2L43_00995) - 224409..225326 (-) 918 WP_220638321.1 LysR family transcriptional regulator -
  K2L43_RS01000 (K2L43_01000) - 225435..226244 (+) 810 WP_220638322.1 SDR family NAD(P)-dependent oxidoreductase -
  K2L43_RS01005 (K2L43_01005) - 226374..228111 (-) 1738 Protein_202 methyl-accepting chemotaxis protein -
  K2L43_RS01010 (K2L43_01010) comM 228157..229695 (-) 1539 WP_012655283.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K2L43_RS01015 (K2L43_01015) - 229914..230645 (+) 732 WP_220638323.1 TorF family putative porin -
  K2L43_RS01020 (K2L43_01020) glnK 230666..231004 (+) 339 WP_011803632.1 P-II family nitrogen regulator -
  K2L43_RS01025 (K2L43_01025) - 231051..232478 (+) 1428 WP_220638324.1 ammonium transporter -
  K2L43_RS01030 (K2L43_01030) - 232618..233568 (+) 951 WP_220638325.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53610.39 Da        Isoelectric Point: 7.5333

>NTDB_id=594775 K2L43_RS01010 WP_012655283.1 228157..229695(-) (comM) [Diaphorobacter sp. MNS-0]
MSLALVQSRALLGLHAPAVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPANKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLDGWEFAGELSLSGLLRPVRGALATSLALRALAQPVRTVLPPGSAEEAALVPGTEIYRA
HHLLDVVRQFVPVPPPNDDGADDGGWQRLQPAPPAPATDGPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSMLA
QRFAGLLPPMGVEQALESAAIASLAGRFSPAQWMQRTTASPHHSCSAIALVGGGSPPRPGEISLAHEGVLFLDEFPEFAR
SALEALREPLESGRITIARAAQRAEFPARFQLVAAMNPCPCGFAGSHQRACRCTPDQIARYQGKLSGPLLDRIDLHVEVP
ALPPEELLGAPPGEPSGAVRERVARAHERALQRQGKANQALQGQELEQMAALDAPAARFLQAAAARLAWSARSTHRALKV
ARTIADLSGCETVGAAHVAEAVQYRRALRAPA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=594775 K2L43_RS01010 WP_012655283.1 228157..229695(-) (comM) [Diaphorobacter sp. MNS-0]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCACGCGCCCGCCGTTACGGTGGAAGTACACCTGGCCAA
CGGGTTGCCCAGCTTCGCGCTGGTGGGCCTGGCCGATGTCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCCGCGCTGC
AGAACGCCGGGCTGGAATTCCCGGCCAACAAGAAGATCACCGTGAACCTGGCGCCGGCCGATCTGCCCAAAGACTCCGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCGAGCGGGCAGATCGACGCGGCCCGGTTGGACGGCTGGGAGTT
CGCCGGCGAGCTATCGCTGTCGGGCCTGCTGCGCCCGGTGCGCGGCGCCCTGGCGACCAGCTTGGCGCTGCGCGCGCTGG
CGCAGCCCGTACGCACGGTGCTTCCCCCCGGCAGCGCCGAAGAAGCTGCGCTGGTGCCGGGCACCGAGATCTACCGCGCG
CACCACCTGTTGGACGTGGTACGCCAGTTCGTGCCCGTGCCCCCGCCGAACGATGATGGCGCGGACGACGGCGGTTGGCA
GCGGCTGCAACCCGCGCCGCCGGCCCCGGCCACCGATGGCCCGGACCTGGCCGACGTGAAGGGGCAGGCCGCGGCCAAGC
GCGCACTGGAGATCGCTGCCGCAGGCGGGCACGGGCTGCTGCTCGTGGGGCCCCCGGGCTCGGGCAAATCCATGCTGGCC
CAGCGTTTTGCCGGGCTGCTGCCCCCGATGGGGGTGGAGCAAGCGCTGGAGAGCGCGGCCATTGCCAGCCTGGCCGGGCG
CTTCAGCCCCGCGCAGTGGATGCAGCGCACCACAGCCAGCCCGCACCACAGCTGCAGCGCGATCGCACTGGTGGGCGGGG
GCTCGCCGCCGCGCCCGGGCGAGATCTCGCTCGCGCACGAAGGCGTGCTGTTCCTCGATGAATTCCCCGAATTCGCCCGC
AGCGCCCTGGAGGCGCTGCGCGAGCCGCTGGAGAGCGGGCGCATCACCATTGCCCGGGCGGCGCAGCGCGCCGAGTTCCC
GGCGCGCTTTCAGCTCGTGGCGGCCATGAACCCCTGCCCCTGTGGTTTTGCGGGCTCGCACCAGCGCGCCTGCCGCTGCA
CACCCGACCAGATCGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAGGTGCCC
GCGCTGCCGCCCGAGGAACTGCTGGGCGCCCCGCCCGGCGAACCCAGCGGCGCCGTGCGCGAACGCGTGGCCCGCGCGCA
CGAACGAGCGCTCCAGCGCCAGGGCAAGGCCAACCAGGCATTGCAGGGTCAGGAGCTGGAACAGATGGCGGCGCTGGACG
CGCCGGCCGCGCGGTTCCTGCAGGCCGCGGCGGCGCGCCTGGCGTGGTCGGCGCGCAGCACGCACCGGGCCCTCAAGGTT
GCACGTACTATTGCCGATCTATCGGGTTGCGAGACCGTGGGCGCCGCCCATGTGGCCGAAGCCGTGCAATACCGGCGCGC
CCTGCGCGCACCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S4KK06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.344

100

0.523
  comM Haemophilus influenzae Rd KW20

50.769

100

0.516
  comM Vibrio campbellii strain DS40M4

50.685

99.805

0.506
  comM Glaesserella parasuis strain SC1401

50.098

99.414

0.498
  comM Legionella pneumophila str. Paris

48.544

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.544

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.164

100

0.432