Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K1721_RS01005 Genome accession   NZ_CP080591
Coordinates   212697..214217 (-) Length   506 a.a.
NCBI ID   WP_032988518.1    Uniprot ID   -
Organism   Cronobacter sakazakii strain Crono-589     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 207697..219217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1721_RS00995 (K1721_01000) hdfR 211339..212172 (-) 834 WP_104669286.1 HTH-type transcriptional regulator HdfR -
  K1721_RS01000 (K1721_01005) - 212280..212618 (+) 339 WP_004387280.1 DUF413 domain-containing protein -
  K1721_RS01005 (K1721_01010) comM 212697..214217 (-) 1521 WP_032988518.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K1721_RS01010 (K1721_01015) ilvL 214569..214667 (+) 99 WP_071601137.1 ilv operon leader peptide -
  K1721_RS01015 (K1721_01020) ilvG 214806..216452 (+) 1647 WP_004387278.1 acetolactate synthase 2 catalytic subunit -
  K1721_RS01020 (K1721_01025) ilvM 216449..216706 (+) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  K1721_RS01025 (K1721_01030) - 216727..217656 (+) 930 WP_004387276.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54920.30 Da        Isoelectric Point: 7.5785

>NTDB_id=594285 K1721_RS01005 WP_032988518.1 212697..214217(-) (comM) [Cronobacter sakazakii strain Crono-589]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKVTINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAHHL
QEVCAFMEGKTQLECAEPSGFEFREPAGDLGEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQAGQTG
ESSAQVRERVMVSRERQLARQGKLNAMLDNREIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQKQWI
GREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=594285 K1721_RS01005 WP_032988518.1 212697..214217(-) (comM) [Cronobacter sakazakii strain Crono-589]
ATGTCGTTATCAGTTATTCATACCCGCGCTGCGCTTGGGGTTAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCGC
CGGGCTGCCCGGCCTGACTATTGTCGGCTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGCGTACGCAGCGCGCTTA
TCAATAGCGGTTATGAATTTCCGGCTAAAAAGGTAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAAGGTGGGCGA
TATGATTTACCTATCGCCATCGCGCTTCTGGCCGCCTCTGAGCAATTGAGCGCATCCCATCTTGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACAGGCGCGCTGAGAGGCGTTCCCGGCGCAATTTCAGCCGCCATCGAGGCTCTGGGTTGTAAAA
GGAAAATTATCGTCGCGCATGATAATGGCCCTGAAGTAGGACTCATCAATAAAGAGGGTTGCCTTGTGGCTCATCATCTG
CAGGAGGTCTGCGCCTTCATGGAAGGAAAAACACAGCTGGAATGCGCTGAGCCATCCGGCTTTGAATTCAGAGAGCCGGC
GGGAGATCTGGGCGAGGTTATCGGTCAACCACAGGGAAAGCGCGCGCTTGAGTTAACCGCAGCGGGTGGGCATAACCTGC
TTTTTATTGGGCCTCCTGGTACAGGTAAAACCATGCTTGCCAGCAGACTCAATGGGTTACTGCCGCCTCTGAGCGACCAG
GAGGCGCTGGAGAGCGCTGCGATACTCAGCCTGGTCAACCCCGTCTCTTTACACCATCAATGGCGTCAGCGTCCATTCAG
AGCCCCTCACCATAGCGCATCGCTTAACGCCATGGTGGGCGGAGGAGCTATTCCTGCGCCAGGAGAGATCTCACTTGCCC
ATAACGGCGTGCTTTTTCTGGATGAATTACCTGAGTTTGAACGTCGCGTATTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAAATCCATCTTTCACGAACCAGGGCGAAATTAACCTATCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCTAG
TCCGACAGGGCACTACAAAGGCAATCACAATCGCTGCTCACCGGAGCAAACGCTGCGCTATCTTGGGCGGCTTTCCGGGC
CATTTCTTGACAGGTTTGATCTCTCCCTTGAAATCCCGCTTCCCCCGCCAGGTATGCTTAGCCAGGCAGGACAGACCGGT
GAAAGCAGCGCGCAAGTAAGGGAACGAGTCATGGTTAGCAGAGAACGTCAGCTTGCACGTCAGGGAAAACTCAATGCCAT
GCTGGATAACCGGGAAATACGTCAGTTTTGTGTGCTTAGTCCGGAGGACGCGCAGTGGCTGGAGGCAGCATTAATCAAAC
TGGGGTTGTCGGTTCGCGCCTGGCAGCGTTTACTTAAAGTTGCACGCACAATTGCAGATTGTGAACAGAAACAATGGATT
GGTCGTGAGCATCTTCAGGAGGCACTGAGCTATCGTGCAATAGACAGGATGCTGGCTCATTTACAAAACATGATGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.1

100

0.615
  comM Vibrio cholerae strain A1552

60.359

99.209

0.599
  comM Glaesserella parasuis strain SC1401

59.369

100

0.595
  comM Vibrio campbellii strain DS40M4

59.96

99.209

0.595
  comM Legionella pneumophila str. Paris

46.906

99.012

0.464
  comM Legionella pneumophila strain ERS1305867

46.906

99.012

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.615

100

0.439