Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JMO08_RS01795 | Genome accession | NZ_CP080562 |
| Coordinates | 406386..406889 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain HL21008 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 402229..450696 | 406386..406889 | within | 0 |
Gene organization within MGE regions
Location: 402229..450696
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMO08_RS01765 (JMO08_000353) | - | 402326..403171 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| JMO08_RS01770 (JMO08_000354) | - | 403325..404206 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| JMO08_RS01775 (JMO08_000355) | - | 404236..404439 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| JMO08_RS01780 (JMO08_000356) | ychF | 404451..405548 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| JMO08_RS01785 (JMO08_000357) | - | 405634..405825 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| JMO08_RS01790 (JMO08_000358) | rpsF | 406069..406365 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| JMO08_RS01795 (JMO08_000359) | ssbA | 406386..406889 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| JMO08_RS01800 (JMO08_000360) | rpsR | 406941..407183 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| JMO08_RS01805 (JMO08_000361) | - | 407460..408398 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| JMO08_RS01810 (JMO08_000362) | - | 408437..409150 (-) | 714 | Protein_363 | tyrosine-type recombinase/integrase | - |
| JMO08_RS01815 (JMO08_000363) | selX | 409356..409967 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| JMO08_RS01820 (JMO08_000364) | - | 410336..410704 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| JMO08_RS01825 (JMO08_000365) | - | 410885..411457 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| JMO08_RS01830 (JMO08_000366) | - | 411594..411857 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| JMO08_RS01835 (JMO08_000367) | - | 412157..412408 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| JMO08_RS01840 (JMO08_000368) | - | 412447..412656 (-) | 210 | WP_000211677.1 | hypothetical protein | - |
| JMO08_RS01845 (JMO08_000369) | - | 412834..413415 (+) | 582 | WP_000158375.1 | histidine phosphatase family protein | - |
| JMO08_RS01850 (JMO08_000370) | - | 413481..413864 (-) | 384 | WP_000868259.1 | hypothetical protein | - |
| JMO08_RS01855 (JMO08_000371) | - | 414134..414760 (-) | 627 | WP_000746679.1 | NDxxF motif lipoprotein | - |
| JMO08_RS01860 (JMO08_000372) | - | 414833..415068 (-) | 236 | Protein_373 | hypothetical protein | - |
| JMO08_RS01865 (JMO08_000373) | ahpF | 415204..416727 (-) | 1524 | WP_000930514.1 | alkyl hydroperoxide reductase subunit F | - |
| JMO08_RS01870 (JMO08_000374) | ahpC | 416743..417312 (-) | 570 | WP_000052781.1 | alkyl hydroperoxide reductase subunit C | - |
| JMO08_RS01875 (JMO08_000375) | nfsA | 417804..418559 (+) | 756 | WP_001287099.1 | oxygen-insensitive NADPH nitroreductase | - |
| JMO08_RS01880 (JMO08_000376) | - | 418639..420027 (-) | 1389 | WP_220353771.1 | L-cystine transporter | - |
| JMO08_RS01885 (JMO08_000377) | - | 420112..420210 (+) | 99 | WP_001792089.1 | hypothetical protein | - |
| JMO08_RS01890 (JMO08_000378) | - | 420874..422193 (+) | 1320 | WP_001557163.1 | ISL3-like element IS1181 family transposase | - |
| JMO08_RS15140 | - | 422241..422312 (+) | 72 | WP_370591525.1 | hypothetical protein | - |
| JMO08_RS01895 (JMO08_000379) | - | 422525..423481 (-) | 957 | WP_000956137.1 | hypothetical protein | - |
| JMO08_RS01900 (JMO08_000380) | - | 423599..424261 (-) | 663 | WP_000394698.1 | hypothetical protein | - |
| JMO08_RS01905 (JMO08_000381) | - | 424404..424811 (-) | 408 | WP_000763767.1 | general stress protein | - |
| JMO08_RS01910 (JMO08_000382) | xpt | 425324..425902 (+) | 579 | WP_000421410.1 | xanthine phosphoribosyltransferase | - |
| JMO08_RS01915 (JMO08_000383) | pbuX | 425902..427170 (+) | 1269 | WP_000793018.1 | xanthine permease PbuX | - |
| JMO08_RS01920 (JMO08_000384) | guaB | 427208..428674 (+) | 1467 | WP_000264071.1 | IMP dehydrogenase | - |
| JMO08_RS01925 (JMO08_000385) | guaA | 428699..430240 (+) | 1542 | WP_000424963.1 | glutamine-hydrolyzing GMP synthase | - |
| JMO08_RS01930 (JMO08_000386) | - | 430308..431501 (-) | 1194 | WP_000237797.1 | site-specific integrase | - |
| JMO08_RS01935 (JMO08_000387) | - | 431528..431728 (-) | 201 | WP_000633907.1 | DUF3173 family protein | - |
| JMO08_RS01940 (JMO08_000388) | - | 432226..432456 (-) | 231 | WP_000845143.1 | helix-turn-helix domain-containing protein | - |
| JMO08_RS01945 (JMO08_000389) | - | 432453..432875 (-) | 423 | WP_000804879.1 | RNA polymerase sigma factor | - |
| JMO08_RS01955 (JMO08_000391) | - | 433406..433759 (+) | 354 | WP_001227350.1 | helix-turn-helix domain-containing protein | - |
| JMO08_RS01960 (JMO08_000392) | - | 433817..434005 (-) | 189 | WP_032506803.1 | cysteine-rich KTR domain-containing protein | - |
| JMO08_RS01965 (JMO08_000393) | tet(M) | 434103..436022 (-) | 1920 | WP_000691737.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| JMO08_RS01970 (JMO08_000394) | - | 436038..436154 (-) | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| JMO08_RS01975 (JMO08_000395) | - | 436399..437328 (-) | 930 | WP_000584387.1 | conjugal transfer protein | - |
| JMO08_RS01980 (JMO08_000396) | - | 437345..438367 (-) | 1023 | WP_000768373.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| JMO08_RS01985 (JMO08_000397) | - | 438364..440391 (-) | 2028 | WP_000192393.1 | CD3337/EF1877 family mobilome membrane protein | - |
| JMO08_RS01990 (JMO08_000398) | - | 440388..442841 (-) | 2454 | WP_000331165.1 | ATP-binding protein | - |
| JMO08_RS01995 (JMO08_000399) | - | 442825..443220 (-) | 396 | WP_000723887.1 | conjugal transfer protein | - |
| JMO08_RS02000 (JMO08_000400) | - | 443292..443930 (-) | 639 | WP_000248477.1 | DUF6037 family protein | - |
| JMO08_RS02005 (JMO08_000401) | - | 443986..444486 (-) | 501 | WP_000425404.1 | antirestriction protein ArdA | - |
| JMO08_RS02010 (JMO08_000402) | - | 444547..445326 (-) | 780 | WP_000675717.1 | abortive infection family protein | - |
| JMO08_RS02015 (JMO08_000403) | - | 445368..445589 (-) | 222 | WP_001009054.1 | hypothetical protein | - |
| JMO08_RS02020 (JMO08_000404) | - | 445586..445876 (-) | 291 | WP_000055376.1 | hypothetical protein | - |
| JMO08_RS02025 (JMO08_000405) | mobT | 445873..447057 (-) | 1185 | WP_000426689.1 | MobT family relaxase | - |
| JMO08_RS02030 (JMO08_000406) | - | 447239..448642 (-) | 1404 | WP_001130244.1 | FtsK/SpoIIIE domain-containing protein | - |
| JMO08_RS02035 (JMO08_000407) | - | 448664..449437 (-) | 774 | WP_000185761.1 | hypothetical protein | - |
| JMO08_RS02040 (JMO08_000408) | - | 449447..449824 (-) | 378 | WP_001234191.1 | YdcP family protein | - |
| JMO08_RS02045 (JMO08_000409) | - | 449845..450159 (-) | 315 | WP_000421279.1 | YdcP family protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=593963 JMO08_RS01795 WP_000934799.1 406386..406889(+) (ssbA) [Staphylococcus aureus strain HL21008]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=593963 JMO08_RS01795 WP_000934799.1 406386..406889(+) (ssbA) [Staphylococcus aureus strain HL21008]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |