Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M4R35_RS02255 Genome accession   NZ_CP097181
Coordinates   468489..469613 (+) Length   374 a.a.
NCBI ID   WP_064670502.1    Uniprot ID   -
Organism   Escherichia coli strain SH21PTE31     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 463489..474613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4R35_RS02230 mscL 463615..464025 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  M4R35_RS02235 trkA 464155..465531 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  M4R35_RS02240 rsmB 465553..466842 (-) 1290 WP_000744778.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  M4R35_RS02245 fmt 466888..467835 (-) 948 WP_000004473.1 methionyl-tRNA formyltransferase -
  M4R35_RS02250 def 467850..468359 (-) 510 WP_000114984.1 peptide deformylase -
  M4R35_RS02255 dprA 468489..469613 (+) 1125 WP_064670502.1 DNA-protecting protein DprA Machinery gene
  M4R35_RS02260 smg 469585..470058 (+) 474 WP_000460680.1 DUF494 family protein Smg -
  M4R35_RS02265 yrdD 470087..470629 (+) 543 WP_001129722.1 type I DNA topoisomerase -
  M4R35_RS02270 tsaC 470634..471206 (+) 573 WP_001301412.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  M4R35_RS02275 aroE 471211..472029 (+) 819 WP_064670501.1 shikimate dehydrogenase -
  M4R35_RS02280 yrdB 472026..472283 (+) 258 WP_001070563.1 DUF1488 domain-containing protein -
  M4R35_RS02285 yrdA 472259..472813 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -
  M4R35_RS02290 - 472842..473066 (+) 225 WP_154205229.1 hypothetical protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40970.96 Da        Isoelectric Point: 6.3122

>NTDB_id=593833 M4R35_RS02255 WP_064670502.1 468489..469613(+) (dprA) [Escherichia coli strain SH21PTE31]
MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYLGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=593833 M4R35_RS02255 WP_064670502.1 468489..469613(+) (dprA) [Escherichia coli strain SH21PTE31]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG
GGTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCACGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCTCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTAGCGCATAAAGCAGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGTCATGCCCGACTGGCTGCCAGTCTGCT
TGAACAGGGGGGCGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGTAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGAGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

47.967

98.663

0.473
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

49.032

82.888

0.406
  dprA Vibrio cholerae strain A1552

49.032

82.888

0.406
  dprA Haemophilus influenzae Rd KW20

44.807

90.107

0.404
  dprA Glaesserella parasuis strain SC1401

44.51

90.107

0.401
  dprA Legionella pneumophila strain ERS1305867

43.939

88.235

0.388