Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M3M51_RS02545 Genome accession   NZ_CP097170
Coordinates   535837..536961 (+) Length   374 a.a.
NCBI ID   WP_000228525.1    Uniprot ID   -
Organism   Escherichia coli strain AR13438     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 530837..541961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M51_RS02520 (M3M51_02520) mscL 530963..531373 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  M3M51_RS02525 (M3M51_02525) trkA 531503..532879 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  M3M51_RS02530 (M3M51_02530) rsmB 532901..534190 (-) 1290 WP_001361938.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  M3M51_RS02535 (M3M51_02535) fmt 534236..535183 (-) 948 WP_000004466.1 methionyl-tRNA formyltransferase -
  M3M51_RS02540 (M3M51_02540) def 535198..535707 (-) 510 WP_000114986.1 peptide deformylase -
  M3M51_RS02545 (M3M51_02545) dprA 535837..536961 (+) 1125 WP_000228525.1 DNA-protecting protein DprA Machinery gene
  M3M51_RS02550 (M3M51_02550) smg 536933..537406 (+) 474 WP_000460682.1 DUF494 family protein Smg -
  M3M51_RS02555 (M3M51_02555) yrdD 537435..537977 (+) 543 WP_001129723.1 type I DNA topoisomerase -
  M3M51_RS02560 (M3M51_02560) tsaC 537982..538554 (+) 573 WP_001361937.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  M3M51_RS02565 (M3M51_02565) aroE 538559..539377 (+) 819 WP_000451226.1 shikimate dehydrogenase -
  M3M51_RS02570 (M3M51_02570) yrdB 539374..539631 (+) 258 WP_001070584.1 DUF1488 domain-containing protein -
  M3M51_RS02575 (M3M51_02575) yrdA 539607..540161 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40933.83 Da        Isoelectric Point: 6.1402

>NTDB_id=593752 M3M51_RS02545 WP_000228525.1 535837..536961(+) (dprA) [Escherichia coli strain AR13438]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLSWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHAPLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPLGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=593752 M3M51_RS02545 WP_000228525.1 535837..536961(+) (dprA) [Escherichia coli strain AR13438]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACTGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTCTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTTGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCGCGTCGCCATGCTCCACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCTCTTGTCTCGGAATTTCCCCTCGATGTTCCTCCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCGGGTCCATTAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTAACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

48.71

82.888

0.404
  dprA Vibrio cholerae strain A1552

48.71

82.888

0.404
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Legionella pneumophila strain ERS1305867

43.363

90.642

0.393
  dprA Haemophilus influenzae Rd KW20

43.62

90.107

0.393