Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   M2M89_RS13980 Genome accession   NZ_CP097130
Coordinates   2701736..2702431 (-) Length   231 a.a.
NCBI ID   WP_041850180.1    Uniprot ID   -
Organism   Bacillus subtilis strain S16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2696736..2707431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS13955 minD 2697672..2698478 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  M2M89_RS13960 minC 2698480..2699160 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  M2M89_RS13965 mreD 2699213..2699731 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  M2M89_RS13970 mreC 2699728..2700600 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  M2M89_RS13975 mreB 2700631..2701644 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  M2M89_RS13980 ysxA/radC 2701736..2702431 (-) 696 WP_041850180.1 DNA repair protein RadC Machinery gene
  M2M89_RS13985 maf 2702468..2703037 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  M2M89_RS13990 spoIIB 2703191..2704189 (-) 999 WP_041850181.1 stage II sporulation protein SpoIIB -
  M2M89_RS13995 comC 2704323..2705069 (-) 747 WP_080332541.1 A24 family peptidase Machinery gene
  M2M89_RS14000 folC 2705209..2706501 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26167.49 Da        Isoelectric Point: 7.9141

>NTDB_id=593700 M2M89_RS13980 WP_041850180.1 2701736..2702431(-) (ysxA/radC) [Bacillus subtilis strain S16]
MVIQDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILATVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=593700 M2M89_RS13980 WP_041850180.1 2701736..2702431(-) (ysxA/radC) [Bacillus subtilis strain S16]
TTGGTCATACAAGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTACAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.134

100

0.991
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424