Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JMO14_RS01795 | Genome accession | NZ_CP080550 |
| Coordinates | 406497..407000 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain HL18883 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 402340..450807 | 406497..407000 | within | 0 |
Gene organization within MGE regions
Location: 402340..450807
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMO14_RS01765 (JMO14_000353) | - | 402437..403282 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| JMO14_RS01770 (JMO14_000354) | - | 403436..404317 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| JMO14_RS01775 (JMO14_000355) | - | 404347..404550 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| JMO14_RS01780 (JMO14_000356) | ychF | 404562..405659 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| JMO14_RS01785 (JMO14_000357) | - | 405745..405936 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| JMO14_RS01790 (JMO14_000358) | rpsF | 406180..406476 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| JMO14_RS01795 (JMO14_000359) | ssbA | 406497..407000 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| JMO14_RS01800 (JMO14_000360) | rpsR | 407052..407294 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| JMO14_RS01805 (JMO14_000361) | - | 407571..408509 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| JMO14_RS01810 (JMO14_000362) | - | 408548..409261 (-) | 714 | Protein_364 | tyrosine-type recombinase/integrase | - |
| JMO14_RS01815 (JMO14_000363) | selX | 409467..410078 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| JMO14_RS01820 (JMO14_000364) | - | 410447..410815 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| JMO14_RS01825 (JMO14_000365) | - | 410996..411568 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| JMO14_RS01830 (JMO14_000366) | - | 411705..411968 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| JMO14_RS01835 (JMO14_000367) | - | 412268..412519 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| JMO14_RS01840 (JMO14_000368) | - | 412558..412767 (-) | 210 | WP_000211677.1 | hypothetical protein | - |
| JMO14_RS01845 (JMO14_000369) | - | 412945..413526 (+) | 582 | WP_000158375.1 | histidine phosphatase family protein | - |
| JMO14_RS01850 (JMO14_000370) | - | 413592..413975 (-) | 384 | WP_000868259.1 | hypothetical protein | - |
| JMO14_RS01855 (JMO14_000371) | - | 414245..414871 (-) | 627 | WP_000746679.1 | NDxxF motif lipoprotein | - |
| JMO14_RS01860 (JMO14_000372) | - | 414944..415179 (-) | 236 | Protein_374 | hypothetical protein | - |
| JMO14_RS01865 (JMO14_000373) | ahpF | 415315..416838 (-) | 1524 | WP_000930514.1 | alkyl hydroperoxide reductase subunit F | - |
| JMO14_RS01870 (JMO14_000374) | ahpC | 416854..417423 (-) | 570 | WP_000052781.1 | alkyl hydroperoxide reductase subunit C | - |
| JMO14_RS01875 (JMO14_000375) | nfsA | 417915..418670 (+) | 756 | WP_001287099.1 | oxygen-insensitive NADPH nitroreductase | - |
| JMO14_RS01880 (JMO14_000376) | - | 418750..420138 (-) | 1389 | WP_000991018.1 | L-cystine transporter | - |
| JMO14_RS01885 (JMO14_000377) | - | 420223..420321 (+) | 99 | WP_001792089.1 | hypothetical protein | - |
| JMO14_RS01890 (JMO14_000378) | - | 420985..422304 (+) | 1320 | WP_001557163.1 | ISL3-like element IS1181 family transposase | - |
| JMO14_RS14680 | - | 422352..422423 (+) | 72 | WP_370591525.1 | hypothetical protein | - |
| JMO14_RS01895 (JMO14_000379) | - | 422636..423592 (-) | 957 | WP_000956137.1 | hypothetical protein | - |
| JMO14_RS01900 (JMO14_000380) | - | 423710..424372 (-) | 663 | WP_000394698.1 | hypothetical protein | - |
| JMO14_RS01905 (JMO14_000381) | - | 424515..424922 (-) | 408 | WP_000763767.1 | general stress protein | - |
| JMO14_RS01910 (JMO14_000382) | xpt | 425435..426013 (+) | 579 | WP_000421410.1 | xanthine phosphoribosyltransferase | - |
| JMO14_RS01915 (JMO14_000383) | pbuX | 426013..427281 (+) | 1269 | WP_000793018.1 | xanthine permease PbuX | - |
| JMO14_RS01920 (JMO14_000384) | guaB | 427319..428785 (+) | 1467 | WP_000264071.1 | IMP dehydrogenase | - |
| JMO14_RS01925 (JMO14_000385) | guaA | 428810..430351 (+) | 1542 | WP_000424963.1 | glutamine-hydrolyzing GMP synthase | - |
| JMO14_RS01930 (JMO14_000386) | - | 430419..431612 (-) | 1194 | WP_000237797.1 | site-specific integrase | - |
| JMO14_RS01935 (JMO14_000387) | - | 431639..431839 (-) | 201 | WP_000633907.1 | DUF3173 family protein | - |
| JMO14_RS01940 (JMO14_000388) | - | 432337..432567 (-) | 231 | WP_000845143.1 | helix-turn-helix domain-containing protein | - |
| JMO14_RS01945 (JMO14_000389) | - | 432564..432986 (-) | 423 | WP_000804879.1 | RNA polymerase sigma factor | - |
| JMO14_RS01955 (JMO14_000391) | - | 433517..433870 (+) | 354 | WP_001227350.1 | helix-turn-helix domain-containing protein | - |
| JMO14_RS01960 (JMO14_000392) | - | 433928..434116 (-) | 189 | WP_032506803.1 | cysteine-rich KTR domain-containing protein | - |
| JMO14_RS01965 (JMO14_000393) | tet(M) | 434214..436133 (-) | 1920 | WP_000691737.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| JMO14_RS01970 (JMO14_000394) | - | 436149..436265 (-) | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| JMO14_RS01975 (JMO14_000395) | - | 436510..437439 (-) | 930 | WP_000584387.1 | conjugal transfer protein | - |
| JMO14_RS01980 (JMO14_000396) | - | 437456..438478 (-) | 1023 | WP_000768373.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| JMO14_RS01985 (JMO14_000397) | - | 438475..440502 (-) | 2028 | WP_000192393.1 | CD3337/EF1877 family mobilome membrane protein | - |
| JMO14_RS01990 (JMO14_000398) | - | 440499..442952 (-) | 2454 | WP_000331165.1 | ATP-binding protein | - |
| JMO14_RS01995 (JMO14_000399) | - | 442936..443331 (-) | 396 | WP_000723887.1 | conjugal transfer protein | - |
| JMO14_RS02000 (JMO14_000400) | - | 443403..444041 (-) | 639 | WP_000248477.1 | DUF6037 family protein | - |
| JMO14_RS02005 (JMO14_000401) | - | 444097..444597 (-) | 501 | WP_000425404.1 | antirestriction protein ArdA | - |
| JMO14_RS02010 (JMO14_000402) | - | 444658..445437 (-) | 780 | WP_000675717.1 | abortive infection family protein | - |
| JMO14_RS02015 (JMO14_000403) | - | 445479..445700 (-) | 222 | WP_001009054.1 | hypothetical protein | - |
| JMO14_RS02020 (JMO14_000404) | - | 445697..445987 (-) | 291 | WP_000055376.1 | hypothetical protein | - |
| JMO14_RS02025 (JMO14_000405) | mobT | 445984..447168 (-) | 1185 | WP_000426689.1 | MobT family relaxase | - |
| JMO14_RS02030 (JMO14_000406) | - | 447350..448753 (-) | 1404 | WP_001130244.1 | FtsK/SpoIIIE domain-containing protein | - |
| JMO14_RS02035 (JMO14_000407) | - | 448775..449548 (-) | 774 | WP_000185761.1 | hypothetical protein | - |
| JMO14_RS02040 (JMO14_000408) | - | 449558..449935 (-) | 378 | WP_001234191.1 | YdcP family protein | - |
| JMO14_RS02045 (JMO14_000409) | - | 449956..450270 (-) | 315 | WP_000421279.1 | YdcP family protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=593701 JMO14_RS01795 WP_000934799.1 406497..407000(+) (ssbA) [Staphylococcus aureus strain HL18883]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=593701 JMO14_RS01795 WP_000934799.1 406497..407000(+) (ssbA) [Staphylococcus aureus strain HL18883]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |