Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K1Y48_RS09210 Genome accession   NZ_CP080536
Coordinates   1830035..1831546 (-) Length   503 a.a.
NCBI ID   WP_215849149.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain GT2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1825035..1836546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1Y48_RS09190 (K1Y48_09215) tsaB 1826684..1827358 (+) 675 WP_215849150.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  K1Y48_RS09195 (K1Y48_09220) rimI 1827355..1827825 (+) 471 WP_064220074.1 ribosomal protein S18-alanine N-acetyltransferase -
  K1Y48_RS09200 (K1Y48_09225) - 1827832..1829451 (+) 1620 WP_064220075.1 peptide chain release factor 3 -
  K1Y48_RS09205 (K1Y48_09230) - 1829476..1829919 (+) 444 WP_064220076.1 SEL1-like repeat protein -
  K1Y48_RS09210 (K1Y48_09235) comM 1830035..1831546 (-) 1512 WP_215849149.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K1Y48_RS09215 (K1Y48_09240) - 1831550..1831813 (-) 264 WP_064220078.1 accessory factor UbiK family protein -
  K1Y48_RS09220 (K1Y48_09245) - 1831825..1833012 (-) 1188 WP_064220079.1 FAD-dependent monooxygenase -
  K1Y48_RS09225 (K1Y48_09250) - 1833002..1834231 (-) 1230 WP_215861052.1 FAD-dependent monooxygenase -
  K1Y48_RS09230 (K1Y48_09255) - 1834361..1835176 (+) 816 WP_226817787.1 TatD family hydrolase -
  K1Y48_RS09235 (K1Y48_09260) - 1835176..1835922 (+) 747 WP_215850560.1 tRNA threonylcarbamoyladenosine dehydratase -
  K1Y48_RS09240 (K1Y48_09265) - 1836031..1836423 (+) 393 WP_064220083.1 SCP2 sterol-binding domain-containing protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 53890.67 Da        Isoelectric Point: 8.2215

>NTDB_id=593617 K1Y48_RS09210 WP_215849149.1 1830035..1831546(-) (comM) [Acidithiobacillus ferriphilus strain GT2]
MPLALVHSRALTGVQAADVTVECDLGPGLPTFAVVGLAETAVKEARDRVRSAIQNSGFEFPARRMVVNLAPADLPKEGGR
FDLPMAIGILAASGQLPAAALKQLEMIGELALDGSLRPVTGTLSSTLAAGQAHRAILVPQGNAQEAAFAQSTPVFACANL
AEAVAHLRGTDRLPEVISDAKAQESAIPYPDLRDVHGQETAKRALIVAAVGGHHLLLSGPPGTGKSMLAARLPGLLPPLR
RSEALEVAAIHSLQGNGFDIRHWGRRPFRSPHHSASSAALVGGGSHPRPGEISLAHHGILFLDEMPEFPRAVLEVLREPL
ESGEIHIARAARRATFPARFQLVAAMNPCPCGHLGDPQQMCRCTPAQVSQYRNRLSGPLLDRIDIQMEVPALPVSALQEA
AQGESSAYWRERIAQAVDRQWQRQQGRNAQLQGELLAQFCALDAVGTRLLSRASETLHLSARAYHRVLRVARSIADLEGS
DPISSQHLAEAIQYRRLAQTLAR

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=593617 K1Y48_RS09210 WP_215849149.1 1830035..1831546(-) (comM) [Acidithiobacillus ferriphilus strain GT2]
TTGCCGCTGGCGCTAGTCCATAGCCGCGCCCTTACCGGAGTGCAGGCGGCGGACGTCACCGTGGAATGCGATCTGGGTCC
CGGACTGCCTACCTTTGCCGTCGTCGGTCTCGCCGAAACGGCGGTCAAGGAAGCCCGTGACCGGGTGCGCTCGGCTATTC
AGAACAGTGGCTTTGAGTTCCCGGCGCGGCGTATGGTCGTCAATCTGGCCCCCGCCGACCTGCCCAAAGAAGGTGGTCGC
TTCGATCTACCCATGGCCATCGGTATTCTCGCCGCCAGCGGACAGCTGCCTGCAGCCGCACTGAAACAACTGGAGATGAT
TGGCGAACTGGCGCTGGACGGCAGCCTGCGTCCGGTAACGGGCACGCTCTCCAGCACCCTGGCAGCGGGACAAGCCCATC
GTGCCATTCTGGTGCCGCAAGGCAATGCCCAGGAAGCCGCTTTTGCTCAAAGCACCCCCGTCTTTGCCTGCGCGAATCTG
GCCGAAGCCGTCGCCCACCTACGCGGCACGGATCGTCTGCCCGAGGTCATCTCCGATGCCAAGGCCCAGGAATCCGCCAT
TCCCTACCCCGATCTGCGTGACGTACACGGTCAGGAAACGGCCAAGCGGGCGCTGATTGTCGCAGCGGTAGGCGGCCATC
ACCTGCTCCTGTCGGGGCCACCAGGCACCGGCAAAAGCATGCTGGCGGCGCGACTGCCCGGCCTACTGCCCCCTCTACGC
CGCAGCGAGGCGCTGGAAGTGGCAGCCATCCACAGCCTGCAAGGAAACGGCTTTGATATTCGCCATTGGGGTAGACGCCC
GTTCCGTAGCCCCCACCATAGTGCCTCTTCAGCGGCACTGGTGGGCGGGGGTTCGCACCCGCGTCCCGGCGAAATCAGTT
TGGCGCACCACGGTATTCTTTTCCTGGACGAAATGCCCGAGTTCCCCCGCGCGGTATTGGAAGTACTGCGGGAACCGCTG
GAGTCCGGAGAAATCCATATCGCCAGAGCGGCGCGGCGAGCCACTTTTCCGGCCCGTTTTCAGTTGGTCGCGGCAATGAA
TCCCTGTCCCTGCGGCCATCTCGGTGATCCGCAGCAGATGTGCCGCTGTACCCCGGCGCAGGTCAGCCAATACCGCAACC
GACTCTCTGGCCCACTGCTGGATCGCATCGACATCCAGATGGAAGTGCCCGCCCTACCGGTGAGCGCCTTACAAGAGGCG
GCACAGGGCGAAAGTTCTGCCTACTGGCGCGAACGCATAGCTCAGGCCGTTGATCGCCAGTGGCAGCGCCAGCAGGGGCG
CAACGCACAACTTCAGGGCGAACTGCTGGCGCAGTTTTGCGCCCTGGATGCGGTGGGCACCCGCCTGCTCAGCCGCGCCA
GCGAAACCCTGCATCTTTCCGCACGCGCTTACCATCGCGTGCTGCGTGTTGCCCGCAGTATCGCGGATCTGGAAGGGAGT
GATCCGATCAGTAGCCAGCATCTGGCAGAAGCCATCCAGTATCGACGTCTGGCACAGACACTGGCACGGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.789

99.801

0.527
  comM Vibrio campbellii strain DS40M4

52.183

100

0.523
  comM Glaesserella parasuis strain SC1401

51.874

100

0.523
  comM Haemophilus influenzae Rd KW20

51.282

100

0.517
  comM Legionella pneumophila str. Paris

48.425

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.425

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.942

100

0.459