Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K1Y48_RS03155 Genome accession   NZ_CP080536
Coordinates   627336..627809 (-) Length   157 a.a.
NCBI ID   WP_215849967.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain GT2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 622336..632809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1Y48_RS03135 (K1Y48_03120) - 623544..624491 (+) 948 WP_064219936.1 ROK family protein -
  K1Y48_RS03140 (K1Y48_03125) murI 624491..625339 (+) 849 WP_215849073.1 glutamate racemase -
  K1Y48_RS03145 (K1Y48_03130) - 625345..626637 (-) 1293 WP_215849082.1 DUF445 domain-containing protein -
  K1Y48_RS03150 (K1Y48_03135) - 626806..626994 (+) 189 WP_009569363.1 YqaE/Pmp3 family membrane protein -
  K1Y48_RS03155 (K1Y48_03140) ssb 627336..627809 (-) 474 WP_215849967.1 single-stranded DNA-binding protein Machinery gene
  K1Y48_RS03160 (K1Y48_03145) uvrA 627896..630700 (+) 2805 WP_215849966.1 excinuclease ABC subunit UvrA -
  K1Y48_RS03165 (K1Y48_03150) - 630765..631319 (+) 555 WP_215849965.1 hypothetical protein -
  K1Y48_RS03170 (K1Y48_03155) trxA 631433..632302 (+) 870 WP_215849964.1 thioredoxin -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17008.78 Da        Isoelectric Point: 5.0792

>NTDB_id=593610 K1Y48_RS03155 WP_215849967.1 627336..627809(-) (ssb) [Acidithiobacillus ferriphilus strain GT2]
MAGVNKVILLGHLGRDPEMRYQPSGGAIANFSIATSETFKDKEGNKQERTEWHRVVLFGRTAEIAGEYLRKGSMAYVEGR
LQTRKWTDKEGQERYTTEIVGDRLQLVGARGGGGGGAASFDEEDQSRPSGGGSSAGGARKNEMPPAPAEDFDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=593610 K1Y48_RS03155 WP_215849967.1 627336..627809(-) (ssb) [Acidithiobacillus ferriphilus strain GT2]
ATGGCGGGAGTGAACAAGGTCATATTGTTGGGGCATCTGGGACGGGACCCGGAGATGCGTTATCAGCCCAGTGGCGGCGC
CATCGCGAACTTCAGCATCGCGACTTCCGAGACTTTCAAGGACAAGGAAGGCAACAAGCAGGAGCGCACGGAATGGCATC
GGGTGGTGCTCTTCGGACGCACCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGCAGCATGGCTTATGTGGAAGGCCGC
CTGCAGACGCGCAAGTGGACCGACAAGGAAGGGCAGGAGCGCTACACCACGGAGATCGTGGGAGACCGTCTGCAACTGGT
GGGCGCGCGTGGGGGCGGTGGCGGCGGTGCGGCCAGCTTCGATGAGGAAGATCAGTCCCGGCCGAGTGGCGGCGGCAGCA
GTGCCGGGGGCGCGCGGAAGAATGAGATGCCGCCCGCGCCGGCGGAGGATTTTGATGATGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.889

100

0.561
  ssb Vibrio cholerae strain A1552

49.711

100

0.548
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.503
  ssb Neisseria meningitidis MC58

45.349

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.526

100

0.369