Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDH51_RS23490 Genome accession   NZ_CP097001
Coordinates   4760149..4760685 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain NCCP 15734     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4755149..4765685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDH51_RS23470 soxR 4756877..4757341 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  LDH51_RS23475 soxS 4757427..4757750 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  LDH51_RS23480 pdeC 4757753..4759339 (-) 1587 WP_247963751.1 EAL domain-containing protein -
  LDH51_RS23485 yjcB 4759769..4760050 (+) 282 WP_001295689.1 YjcB family protein -
  LDH51_RS23490 ssb 4760149..4760685 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LDH51_RS23495 uvrA 4760939..4763761 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  LDH51_RS23500 yjbR 4763796..4764152 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  LDH51_RS23505 yjbQ 4764156..4764572 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LDH51_RS23510 aphA 4764683..4765396 (-) 714 WP_001384961.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=593315 LDH51_RS23490 WP_000168305.1 4760149..4760685(-) (ssb) [Escherichia coli strain NCCP 15734]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=593315 LDH51_RS23490 WP_000168305.1 4760149..4760685(-) (ssb) [Escherichia coli strain NCCP 15734]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489