Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   K0819_RS01605 Genome accession   NZ_CP080478
Coordinates   336661..337254 (+) Length   197 a.a.
NCBI ID   WP_005496571.1    Uniprot ID   A0A0F2HLP7
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331661..342254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS01590 (K0819_01600) - 332377..334947 (-) 2571 WP_031430573.1 penicillin-binding protein 1A -
  K0819_RS01595 (K0819_01605) pilM 335090..336106 (+) 1017 WP_109884336.1 type IV pilus biogenesis protein PilM Machinery gene
  K0819_RS01600 (K0819_01610) pilN 336090..336668 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  K0819_RS01605 (K0819_01615) pilO 336661..337254 (+) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  K0819_RS01610 (K0819_01620) pilP 337244..337759 (+) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  K0819_RS01615 (K0819_01625) pilQ 337791..339539 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  K0819_RS01620 (K0819_01630) aroK 339728..340246 (+) 519 WP_005381319.1 shikimate kinase AroK -
  K0819_RS01625 (K0819_01635) aroB 340278..341378 (+) 1101 WP_023622897.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23019.57 Da        Isoelectric Point: 4.9419

>NTDB_id=593174 K0819_RS01605 WP_005496571.1 336661..337254(+) (pilO) [Vibrio parahaemolyticus strain Vp2015094]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDGK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=593174 K0819_RS01605 WP_005496571.1 336661..337254(+) (pilO) [Vibrio parahaemolyticus strain Vp2015094]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAATAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGGGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HLP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

94.211

96.447

0.909
  pilO Vibrio cholerae strain A1552

73.298

96.954

0.711