Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   K0819_RS01610 Genome accession   NZ_CP080478
Coordinates   337244..337759 (+) Length   171 a.a.
NCBI ID   WP_005454781.1    Uniprot ID   A0A646LMN6
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332244..342759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS01590 (K0819_01600) - 332377..334947 (-) 2571 WP_031430573.1 penicillin-binding protein 1A -
  K0819_RS01595 (K0819_01605) pilM 335090..336106 (+) 1017 WP_109884336.1 type IV pilus biogenesis protein PilM Machinery gene
  K0819_RS01600 (K0819_01610) pilN 336090..336668 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  K0819_RS01605 (K0819_01615) pilO 336661..337254 (+) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  K0819_RS01610 (K0819_01620) pilP 337244..337759 (+) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  K0819_RS01615 (K0819_01625) pilQ 337791..339539 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  K0819_RS01620 (K0819_01630) aroK 339728..340246 (+) 519 WP_005381319.1 shikimate kinase AroK -
  K0819_RS01625 (K0819_01635) aroB 340278..341378 (+) 1101 WP_023622897.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18844.96 Da        Isoelectric Point: 10.4351

>NTDB_id=593175 K0819_RS01610 WP_005454781.1 337244..337759(+) (pilP) [Vibrio parahaemolyticus strain Vp2015094]
MGNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPSDKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=593175 K0819_RS01610 WP_005454781.1 337244..337759(+) (pilP) [Vibrio parahaemolyticus strain Vp2015094]
ATGGGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
CTTTATTCGTGGTGTTGAGAGCCAGGCTAGGCGAGATGTGGAGAAGCTCAAACCTTCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTTCAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GACGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTATTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A646LMN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

58.14

100

0.585