Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M2J01_RS01925 Genome accession   NZ_CP096964
Coordinates   418759..420174 (+) Length   471 a.a.
NCBI ID   WP_270032199.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY13936     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413759..425174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J01_RS01905 (M2J01_01905) - 414596..415162 (-) 567 WP_034026416.1 hypothetical protein -
  M2J01_RS01910 (M2J01_01910) rsmD 415165..415761 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  M2J01_RS01915 (M2J01_01915) - 415761..417248 (-) 1488 WP_058160873.1 pitrilysin family protein -
  M2J01_RS01920 (M2J01_01920) - 417241..418638 (-) 1398 WP_003084498.1 pitrilysin family protein -
  M2J01_RS01925 (M2J01_01925) pilA 418759..420174 (+) 1416 WP_270032199.1 signal recognition particle-docking protein FtsY Machinery gene
  M2J01_RS01930 (M2J01_01930) ftsE 420171..420842 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  M2J01_RS01935 (M2J01_01935) ftsX 420842..421849 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  M2J01_RS01940 (M2J01_01940) rpoH 421963..422817 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  M2J01_RS01945 (M2J01_01945) - 422882..423487 (+) 606 WP_003084511.1 hypothetical protein -
  M2J01_RS01950 (M2J01_01950) mtgA 423492..424223 (-) 732 WP_019486534.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  M2J01_RS01955 (M2J01_01955) - 424260..424637 (+) 378 WP_034082334.1 DUF423 domain-containing protein -
  M2J01_RS01960 (M2J01_01960) thiS 424740..424940 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 50229.73 Da        Isoelectric Point: 4.3664

>NTDB_id=593069 M2J01_RS01925 WP_270032199.1 418759..420174(+) (pilA) [Pseudomonas aeruginosa strain NY13936]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPVEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPA
TRPGFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYK
ALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNR
IPVIAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAI
NQAKQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=593069 M2J01_RS01925 WP_270032199.1 418759..420174(+) (pilA) [Pseudomonas aeruginosa strain NY13936]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGTCGAGCCGCCGGCGCCG
GTCGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGC
CCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCG
ACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCT
GTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCG
AGGCCACCACCCTGATCGTGCAGAATCTGACCAAGCGCGTGGCGCGCAAGGAACTGGCCGACAGCGGCGCGCTGTACAAG
GCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGT
GATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCA
AGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGC
ATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGG
CATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCC
GGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATC
AACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGG
GGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTA
CCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(181-246)

SRP54-type protein, GTPase domain (SRP54)

(266-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.198

73.036

0.389