Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K1T74_RS12975 Genome accession   NZ_CP080462
Coordinates   2824919..2825452 (-) Length   177 a.a.
NCBI ID   WP_220105847.1    Uniprot ID   -
Organism   Vibrio cholerae strain ICDC-VC702     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2819919..2830452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS12955 - 2820374..2820691 (-) 318 WP_220105846.1 MSHA biogenesis protein MshK -
  K1T74_RS12960 gspM 2820684..2821334 (-) 651 WP_219659310.1 type II secretion system protein GspM -
  K1T74_RS12965 - 2821331..2822770 (-) 1440 WP_001963683.1 PilN domain-containing protein -
  K1T74_RS12970 csrD 2822783..2824795 (-) 2013 WP_002154885.1 RNase E specificity factor CsrD -
  K1T74_RS12975 ssb 2824919..2825452 (-) 534 WP_220105847.1 single-stranded DNA-binding protein Machinery gene
  K1T74_RS12980 qstR 2825744..2826388 (+) 645 WP_001188316.1 LuxR C-terminal-related transcriptional regulator Regulator
  K1T74_RS12985 galU 2826561..2827433 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K1T74_RS12990 uvrA 2827589..2830411 (+) 2823 WP_220105848.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19674.87 Da        Isoelectric Point: 5.7626

>NTDB_id=593069 K1T74_RS12975 WP_220105847.1 2824919..2825452(-) (ssb) [Vibrio cholerae strain ICDC-VC702]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPTKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=593069 K1T74_RS12975 WP_220105847.1 2824919..2825452(-) (ssb) [Vibrio cholerae strain ICDC-VC702]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGACGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

98.87

100

0.989
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.48
  ssb Neisseria meningitidis MC58

47.222

100

0.48