Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   K1T74_RS12980 Genome accession   NZ_CP080462
Coordinates   2825744..2826388 (+) Length   214 a.a.
NCBI ID   WP_001188316.1    Uniprot ID   Q9KUW3
Organism   Vibrio cholerae strain ICDC-VC702     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2820744..2831388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS12965 - 2821331..2822770 (-) 1440 WP_001963683.1 PilN domain-containing protein -
  K1T74_RS12970 csrD 2822783..2824795 (-) 2013 WP_002154885.1 RNase E specificity factor CsrD -
  K1T74_RS12975 ssb 2824919..2825452 (-) 534 WP_220105847.1 single-stranded DNA-binding protein Machinery gene
  K1T74_RS12980 qstR 2825744..2826388 (+) 645 WP_001188316.1 LuxR C-terminal-related transcriptional regulator Regulator
  K1T74_RS12985 galU 2826561..2827433 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K1T74_RS12990 uvrA 2827589..2830411 (+) 2823 WP_220105848.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24736.58 Da        Isoelectric Point: 9.6461

>NTDB_id=593070 K1T74_RS12980 WP_001188316.1 2825744..2826388(+) (qstR) [Vibrio cholerae strain ICDC-VC702]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=593070 K1T74_RS12980 WP_001188316.1 2825744..2826388(+) (qstR) [Vibrio cholerae strain ICDC-VC702]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATTTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.523
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523