Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   K1T74_RS05145 Genome accession   NZ_CP080462
Coordinates   1080406..1080717 (+) Length   103 a.a.
NCBI ID   WP_001166106.1    Uniprot ID   A0AAU8WU30
Organism   Vibrio cholerae strain ICDC-VC702     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1071927..1084343 1080406..1080717 within 0


Gene organization within MGE regions


Location: 1071927..1084343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS05115 tig 1071927..1073228 (+) 1302 WP_220106096.1 trigger factor -
  K1T74_RS05120 clpP 1073334..1073960 (+) 627 WP_000121678.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  K1T74_RS05125 clpX 1074040..1075320 (+) 1281 WP_000130332.1 ATP-dependent protease ATP-binding subunit ClpX -
  K1T74_RS05130 lon 1075443..1077803 (+) 2361 WP_001047611.1 endopeptidase La -
  K1T74_RS05135 - 1077987..1078259 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  K1T74_RS05140 ppiD 1078412..1080271 (+) 1860 WP_114741183.1 peptidylprolyl isomerase -
  K1T74_RS05145 comEA 1080406..1080717 (+) 312 WP_001166106.1 ComEA family DNA-binding protein Machinery gene
  K1T74_RS05150 cmk 1080900..1081577 (+) 678 WP_000094752.1 (d)CMP kinase -
  K1T74_RS05155 rpsA 1081686..1083356 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  K1T74_RS05160 ihfB 1083645..1083923 (+) 279 WP_000167341.1 integration host factor subunit beta -
  K1T74_RS05165 - 1084062..1084343 (+) 282 WP_000691492.1 LapA family protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10957.76 Da        Isoelectric Point: 4.7228

>NTDB_id=593049 K1T74_RS05145 WP_001166106.1 1080406..1080717(+) (comEA) [Vibrio cholerae strain ICDC-VC702]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTQI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=593049 K1T74_RS05145 WP_001166106.1 1080406..1080717(+) (comEA) [Vibrio cholerae strain ICDC-VC702]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATCAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCAAATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

99.029

100

0.99
  comEA Vibrio cholerae strain A1552

99.029

100

0.99
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437