Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K0J45_RS01450 Genome accession   NZ_CP080422
Coordinates   293514..295034 (-) Length   506 a.a.
NCBI ID   WP_220043954.1    Uniprot ID   -
Organism   Shewanella alkalitolerans strain FJAT-54031     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 288514..300034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0J45_RS01425 (K0J45_01425) - 288876..289967 (+) 1092 WP_220043949.1 branched-chain amino acid aminotransferase -
  K0J45_RS01430 (K0J45_01430) - 290011..290415 (-) 405 WP_220043950.1 hypothetical protein -
  K0J45_RS01435 (K0J45_01435) - 290647..291348 (-) 702 WP_220043951.1 GntR family transcriptional regulator -
  K0J45_RS01440 (K0J45_01440) - 291542..292489 (-) 948 WP_220043952.1 acyltransferase -
  K0J45_RS01445 (K0J45_01445) - 292514..293398 (-) 885 WP_220043953.1 acyltransferase -
  K0J45_RS01450 (K0J45_01450) comM 293514..295034 (-) 1521 WP_220043954.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K0J45_RS01455 (K0J45_01455) - 295364..296689 (+) 1326 WP_220043955.1 hemolysin family protein -
  K0J45_RS01460 (K0J45_01460) - 296718..297551 (-) 834 WP_258406741.1 GGDEF domain-containing protein -
  K0J45_RS01465 (K0J45_01465) - 297811..298620 (-) 810 WP_220043957.1 transporter substrate-binding domain-containing protein -
  K0J45_RS01470 (K0J45_01470) ilvY 298688..299572 (-) 885 WP_011864093.1 HTH-type transcriptional activator IlvY -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55158.09 Da        Isoelectric Point: 8.2692

>NTDB_id=592842 K0J45_RS01450 WP_220043954.1 293514..295034(-) (comM) [Shewanella alkalitolerans strain FJAT-54031]
MAIACVTTRAALGVAAPEVTVEVHLSNGLPAFSLVGLPETSVKEAKERVRSALINAGFEFPQRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQVPDTHLADHEFIGELALSGQIRPCNGILPVIIDARKQDKTLVLPLDNRSDAELVGYRKCFFAAHL
QGLAQYLHGQASLPGLTQDLQWLDTQADTDHKCLSDVIGQYQAKRALEIAAAGNHNLLFLGPPGTGKTMLASRMMQLLPP
LDYDEALEVAAIHSVAGLSIPMQAFYRRPFRSPHHTSSAISLVGGGSHPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFASRFQLIAAMNPSPCGDSANARATPDQIQRYLARLSGPFIDRFDLTIEVPRLPQGTLTSSKQ
GETSRDVAQRVHQARERQLSRAGVLNAELSGKQLTQTAGFSQQDLEFLEQSVNQLGLSVRSYHRLQRVARTIADLDQSRD
VARHHIAQALGYRAMDRLLNSLKSPY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=592842 K0J45_RS01450 WP_220043954.1 293514..295034(-) (comM) [Shewanella alkalitolerans strain FJAT-54031]
ATGGCCATCGCCTGCGTCACCACGCGCGCCGCCCTGGGCGTGGCAGCTCCCGAAGTCACGGTCGAAGTGCATCTCAGCAA
TGGCCTGCCCGCCTTCAGCCTGGTGGGACTCCCGGAGACCTCGGTCAAGGAAGCCAAGGAGCGGGTGCGCAGCGCCCTGA
TCAACGCCGGGTTTGAATTCCCACAACGCAGAATAACCGTCAATCTTGCCCCAGCGGATCTACCCAAGCAGGGGGGCCGC
TACGATCTCCCCATCGCCATCGGCATACTGGCCGCCTCCAAGCAGGTGCCCGATACCCATTTAGCGGATCATGAGTTCAT
CGGCGAGCTAGCCCTCTCCGGGCAAATAAGGCCCTGCAACGGCATCTTGCCGGTGATTATCGACGCCCGCAAGCAGGACA
AGACCTTAGTCCTTCCCCTGGATAATCGAAGCGACGCCGAGCTGGTCGGTTATCGAAAGTGCTTCTTCGCCGCCCACCTG
CAAGGCTTAGCCCAGTACCTGCACGGTCAGGCTTCGCTGCCGGGCCTGACCCAAGATCTGCAGTGGCTGGATACTCAGGC
AGATACCGACCACAAGTGCCTCAGCGATGTGATAGGCCAGTACCAGGCCAAACGCGCCCTGGAGATCGCCGCCGCCGGCA
ATCATAACCTGTTGTTTCTCGGTCCTCCGGGGACGGGTAAGACGATGCTGGCCAGCCGCATGATGCAGCTGCTGCCGCCA
CTGGACTATGACGAGGCGTTGGAGGTCGCCGCTATTCACTCGGTGGCGGGGCTTAGCATTCCCATGCAGGCCTTTTATCG
GCGCCCCTTTCGCAGCCCTCACCACACCAGCTCGGCCATCTCACTGGTGGGTGGTGGCAGCCATCCCAAGCCGGGCGAGA
TCTCCCTGGCCCATCGGGGCGTGCTCTTCCTCGACGAGGTGGCCGAGTTTCCCCGCAAGGTACTCGACTGCCTGCGAGAG
CCGATGGAGACAGGCGAGGTAGTGATCTCCCGCGCTGCCGCCAAGCTCACCTTCGCCAGCCGCTTTCAGCTGATCGCCGC
CATGAACCCCAGCCCCTGTGGCGACAGTGCCAACGCCAGAGCCACCCCGGATCAGATCCAGCGCTATCTCGCCAGACTCT
CGGGCCCCTTCATCGATCGCTTCGATCTCACCATAGAGGTGCCCCGCCTGCCCCAAGGCACACTCACCAGCAGCAAGCAG
GGGGAAACCAGCCGAGACGTTGCCCAGCGGGTGCATCAGGCCAGGGAGCGCCAGCTGAGCCGCGCCGGGGTACTCAACGC
CGAGCTGAGCGGTAAACAGCTCACGCAAACCGCGGGCTTCAGCCAGCAGGATCTCGAATTTCTCGAGCAGAGTGTCAACC
AGCTCGGGCTCTCGGTGCGTAGCTATCACAGGCTGCAGAGGGTCGCCCGTACCATAGCGGATCTTGATCAGAGCAGAGAT
GTCGCTCGCCACCATATCGCCCAAGCGCTTGGCTATCGCGCCATGGATCGTCTGCTCAATAGCCTGAAATCACCTTACTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.14

100

0.569
  comM Haemophilus influenzae Rd KW20

55.118

100

0.553
  comM Vibrio campbellii strain DS40M4

54.851

99.802

0.547
  comM Glaesserella parasuis strain SC1401

53.452

100

0.536
  comM Legionella pneumophila str. Paris

48.898

98.617

0.482
  comM Legionella pneumophila strain ERS1305867

48.898

98.617

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.828

97.826

0.419