Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K0I63_RS01435 Genome accession   NZ_CP080420
Coordinates   289978..291498 (-) Length   506 a.a.
NCBI ID   WP_220082288.1    Uniprot ID   -
Organism   Shewanella rhizosphaerae strain FJAT-53764     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 284978..296498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0I63_RS01410 (K0I63_01410) - 285340..286431 (+) 1092 WP_220082283.1 branched-chain amino acid aminotransferase -
  K0I63_RS01415 (K0I63_01415) - 286475..286879 (-) 405 WP_220082284.1 hypothetical protein -
  K0I63_RS01420 (K0I63_01420) - 287111..287812 (-) 702 WP_220082285.1 GntR family transcriptional regulator -
  K0I63_RS01425 (K0I63_01425) - 288006..288953 (-) 948 WP_220082286.1 acyltransferase -
  K0I63_RS01430 (K0I63_01430) - 288978..289862 (-) 885 WP_220082287.1 acyltransferase -
  K0I63_RS01435 (K0I63_01435) comM 289978..291498 (-) 1521 WP_220082288.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K0I63_RS01440 (K0I63_01440) - 291828..293153 (+) 1326 WP_011864090.1 hemolysin family protein -
  K0I63_RS01445 (K0I63_01445) - 293181..294062 (-) 882 WP_220043956.1 diguanylate cyclase -
  K0I63_RS01450 (K0I63_01450) - 294260..295021 (-) 762 WP_258406918.1 transporter substrate-binding domain-containing protein -
  K0I63_RS01455 (K0I63_01455) ilvY 295137..296021 (-) 885 WP_011864093.1 HTH-type transcriptional activator IlvY -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55135.05 Da        Isoelectric Point: 8.2686

>NTDB_id=592797 K0I63_RS01435 WP_220082288.1 289978..291498(-) (comM) [Shewanella rhizosphaerae strain FJAT-53764]
MAIACVTTRASLGVAAPEVTVEVHLSNGLPAFSLVGLPETSVKEAKERVRSALINAGFEFPQRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQVPDTHLADHEFIGELALSGQIRPCSGSLPVIIDARKQDKTLVLPLENRGDAELVGYRKCFFAAHL
QGLAQYLHGQTSLPGLTQDLQWLDTQADTDHKCLSDVIGQYQAKRALEIAAAGNHNLLFLGPPGTGKTMLASRMMQLLPP
LDYDEALEVAAIHSVAGLNIPMQAFYRRPFRSPHHTSSAISLVGGGSHPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFASRFQLIAAMNPSPCGDSANARATPDQIQRYLARLSGPFIDRFDLTIEVPRLPQGTLTSSKQ
GETSRDVAQRVHKARERQLSRAGVLNAELSGKQLTQTAGFSQQDLEFLEQSVNQLGLSVRSYHRLQRVARTIADLEQSTD
VARHHIAQALGYRAMDRLLNSLKTPY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=592797 K0I63_RS01435 WP_220082288.1 289978..291498(-) (comM) [Shewanella rhizosphaerae strain FJAT-53764]
ATGGCCATCGCCTGCGTCACCACGCGCGCCAGCCTGGGCGTGGCAGCTCCCGAAGTCACGGTCGAAGTACACCTCAGCAA
TGGCCTGCCCGCCTTTAGCCTGGTGGGACTCCCGGAGACCTCAGTCAAGGAAGCCAAGGAGCGGGTGCGCAGCGCCCTGA
TCAATGCCGGGTTTGAATTTCCTCAACGCAGAATAACCGTCAATCTTGCTCCCGCCGATCTGCCCAAACAGGGGGGCCGT
TACGATCTCCCCATCGCCATCGGCATACTGGCCGCCTCCAAGCAGGTGCCCGATACCCATTTGGCGGATCATGAGTTCAT
CGGCGAGTTGGCCCTCTCCGGGCAGATAAGGCCCTGCAGCGGCAGCTTGCCGGTGATCATAGATGCCCGCAAGCAGGACA
AGACCTTGGTCCTTCCCCTGGAGAATCGAGGCGATGCCGAGCTGGTCGGTTATCGAAAGTGCTTCTTCGCCGCCCACCTG
CAAGGCTTAGCCCAGTACCTGCACGGTCAGACTTCGCTGCCCGGCCTGACCCAAGATCTGCAGTGGCTGGATACTCAGGC
TGACACCGACCACAAGTGCCTCAGCGATGTGATCGGCCAGTACCAGGCCAAACGCGCCCTGGAGATCGCCGCCGCCGGCA
ATCATAACCTGTTGTTTCTCGGTCCTCCAGGAACGGGCAAGACGATGCTGGCCAGCCGGATGATGCAGCTGCTGCCACCA
CTGGACTATGACGAGGCGTTAGAGGTTGCCGCCATTCACTCGGTGGCGGGGCTTAACATTCCCATGCAGGCCTTTTATCG
GCGCCCCTTTCGCAGCCCTCACCACACAAGCTCGGCCATCTCACTGGTGGGCGGTGGCAGCCATCCCAAGCCGGGCGAGA
TCTCCCTGGCCCATCGCGGTGTGCTCTTCCTCGACGAGGTGGCCGAGTTTCCCCGCAAGGTACTCGACTGCCTGCGAGAG
CCGATGGAGACAGGCGAGGTAGTGATCTCCCGCGCTGCCGCCAAGCTCACCTTCGCCAGCCGCTTTCAGCTGATCGCCGC
CATGAACCCCAGCCCCTGCGGCGACAGCGCCAACGCCAGGGCCACCCCGGATCAGATCCAGCGCTATCTCGCCAGACTCT
CGGGCCCCTTCATCGATCGCTTCGATCTCACCATAGAGGTGCCCCGCCTGCCCCAAGGCACACTCACCAGCAGCAAGCAG
GGGGAAACCAGCCGGGATGTTGCCCAGCGGGTGCATAAGGCCAGGGAGCGCCAGCTGAGCCGCGCCGGAGTACTTAACGC
CGAGCTGAGCGGTAAACAGCTCACGCAAACCGCGGGCTTCAGCCAGCAGGATCTCGAGTTTCTCGAGCAGAGCGTCAACC
AGCTCGGGCTCTCGGTGCGCAGCTATCACAGGCTGCAGAGGGTCGCCCGTACCATAGCGGATCTTGAGCAGAGCACAGAC
GTCGCTCGCCACCATATCGCCCAAGCGCTTGGCTATCGCGCCATGGATCGTCTGCTCAATAGCCTGAAAACGCCTTACTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.556

100

0.571
  comM Haemophilus influenzae Rd KW20

55.731

100

0.557
  comM Vibrio campbellii strain DS40M4

55.05

99.802

0.549
  comM Glaesserella parasuis strain SC1401

53.649

100

0.538
  comM Legionella pneumophila str. Paris

49.299

98.617

0.486
  comM Legionella pneumophila strain ERS1305867

49.299

98.617

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.434

97.826

0.425