Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K0H81_RS01470 Genome accession   NZ_CP080417
Coordinates   298935..300455 (-) Length   506 a.a.
NCBI ID   WP_220059644.1    Uniprot ID   -
Organism   Shewanella halotolerans strain FJAT-53555     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 293935..305455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H81_RS01445 (K0H81_01445) - 294297..295388 (+) 1092 WP_220059640.1 branched-chain amino acid aminotransferase -
  K0H81_RS01450 (K0H81_01450) - 295432..295785 (-) 354 WP_220059641.1 hypothetical protein -
  K0H81_RS01455 (K0H81_01455) - 296068..296757 (-) 690 WP_258406354.1 GntR family transcriptional regulator -
  K0H81_RS01460 (K0H81_01460) - 296963..297910 (-) 948 WP_220059643.1 acyltransferase -
  K0H81_RS01465 (K0H81_01465) - 297935..298819 (-) 885 WP_144203859.1 acyltransferase -
  K0H81_RS01470 (K0H81_01470) comM 298935..300455 (-) 1521 WP_220059644.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K0H81_RS01475 (K0H81_01475) - 300785..302107 (+) 1323 WP_220059645.1 hemolysin family protein -
  K0H81_RS01480 (K0H81_01480) - 302135..303016 (-) 882 WP_220059646.1 GGDEF domain-containing protein -
  K0H81_RS01485 (K0H81_01485) - 303214..304023 (-) 810 WP_220059647.1 transporter substrate-binding domain-containing protein -
  K0H81_RS01490 (K0H81_01490) ilvY 304091..304975 (-) 885 WP_011864093.1 HTH-type transcriptional activator IlvY -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55245.27 Da        Isoelectric Point: 7.9888

>NTDB_id=592727 K0H81_RS01470 WP_220059644.1 298935..300455(-) (comM) [Shewanella halotolerans strain FJAT-53555]
MAIACVTTRASLGVAAPEVTVEVHLSNGLPAFSLVGLPETSVKEAKERVRSALINAGFEFPQRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQVPDTHLADHEFIGELALSGQIRPCNGILPVIIDARKQDKTLVLPLENRDDAELVGYRKCFFAAHL
QGLAQYLHGQTSLPGLSQDLQWLDSQPDTDHKCLSDVIGQYQAKRALEIAAAGNHNLLFLGPPGTGKTMLASRMMQLLPP
LDYDEALEVAAIHSVAGLSIPMQAFYQRPFRCPHHTSSAISLVGGGSHPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFASRFQLIAAMNPSPCGDSANARATPDQIQRYLARLSGPFIDRFDLTIEVPRLPQGTLTSSQR
GETSRDVAQRVHQARERQLSRAGVLNAELSGKLLTQTAGFSQKDLEFLEQSVNQLGLSVRSYHRLQRVARTIADLEQSKD
VARHHIAQALGYRAMDRLLNSLKTPY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=592727 K0H81_RS01470 WP_220059644.1 298935..300455(-) (comM) [Shewanella halotolerans strain FJAT-53555]
ATGGCCATCGCCTGCGTCACCACGCGCGCCAGCCTGGGCGTGGCAGCTCCCGAAGTCACGGTCGAAGTGCATCTCAGCAA
TGGCTTGCCCGCCTTCAGCTTGGTGGGACTCCCGGAGACCTCGGTCAAGGAAGCCAAGGAGCGGGTACGCAGCGCCCTGA
TCAACGCCGGATTTGAATTTCCGCAACGCAGAATAACCGTCAATCTTGCCCCAGCGGATCTACCCAAGCAGGGGGGCCGC
TACGATCTCCCCATCGCCATCGGCATACTGGCTGCCTCCAAGCAGGTGCCCGATACCCACTTAGCGGATCATGAGTTCAT
CGGCGAGCTAGCCCTCTCCGGGCAAATAAGGCCCTGCAACGGCATCTTGCCGGTGATCATAGATGCCCGCAAGCAGGACA
AGACCTTAGTCCTCCCCCTGGAGAATCGAGACGACGCCGAACTGGTCGGTTATCGAAAGTGCTTCTTCGCCGCCCACCTG
CAAGGCTTAGCCCAGTACCTGCACGGTCAGACTTCACTGCCAGGCCTGTCCCAAGATCTGCAGTGGCTGGACTCCCAACC
AGACACAGACCACAAGTGCCTCAGCGATGTGATAGGCCAATATCAAGCCAAGCGCGCCCTGGAGATCGCCGCCGCAGGCA
ATCATAACCTATTATTTCTCGGTCCTCCGGGGACGGGTAAGACAATGCTGGCCAGCCGCATGATGCAGCTGCTGCCGCCA
CTGGACTATGACGAGGCGTTGGAGGTCGCCGCCATTCACTCGGTGGCGGGGCTCAGCATTCCCATGCAGGCTTTTTATCA
ACGCCCCTTTCGCTGCCCTCACCACACCAGCTCGGCCATCTCACTGGTGGGCGGTGGCAGCCACCCCAAGCCAGGCGAGA
TCTCCCTGGCCCATCGCGGCGTGCTCTTCCTCGACGAGGTCGCCGAGTTTCCCCGCAAGGTGCTCGATTGCCTGCGAGAG
CCGATGGAGACAGGCGAGGTGGTGATCTCCCGCGCCGCCGCCAAGCTCACCTTTGCCAGCCGCTTTCAGTTGATCGCCGC
CATGAACCCCAGCCCCTGCGGCGACAGCGCCAACGCCAGAGCCACCCCGGATCAGATCCAGCGCTATCTCGCCAGACTCT
CGGGGCCCTTCATCGATCGCTTCGATCTCACCATAGAGGTCCCCCGGCTGCCCCAAGGCACACTCACCAGCAGTCAGCGT
GGTGAAACCAGCCGAGATGTTGCTCAGCGAGTGCATCAGGCCAGGGAGCGCCAGCTGAGCCGCGCCGGAGTACTCAACGC
CGAGCTGAGCGGCAAACTGCTCACGCAAACCGCAGGCTTCAGCCAGAAAGATCTCGAGTTTCTCGAGCAGAGTGTCAACC
AGCTCGGGCTCTCGGTGCGCAGCTATCACAGGCTGCAGAGGGTTGCCCGCACCATAGCCGATCTTGAGCAGAGCAAAGAT
GTTGCACGCCACCACATCGCCCAAGCACTTGGCTATCGCGCCATGGATCGTCTGCTCAATAGCCTGAAAACGCCTTACTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.974

100

0.573
  comM Haemophilus influenzae Rd KW20

56.102

100

0.563
  comM Vibrio campbellii strain DS40M4

55.446

99.802

0.553
  comM Glaesserella parasuis strain SC1401

53.846

100

0.54
  comM Legionella pneumophila str. Paris

49.299

98.617

0.486
  comM Legionella pneumophila strain ERS1305867

49.299

98.617

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.828

97.826

0.419