Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K0H80_RS01410 Genome accession   NZ_CP080416
Coordinates   288955..290475 (-) Length   506 a.a.
NCBI ID   WP_220072834.1    Uniprot ID   -
Organism   Shewanella aegiceratis strain FJAT-53532     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 283955..295475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H80_RS01385 (K0H80_01385) - 284317..285408 (+) 1092 WP_220072829.1 branched-chain amino acid aminotransferase -
  K0H80_RS01390 (K0H80_01390) - 285452..285856 (-) 405 WP_220072830.1 hypothetical protein -
  K0H80_RS01395 (K0H80_01395) - 286088..286789 (-) 702 WP_220072831.1 GntR family transcriptional regulator -
  K0H80_RS01400 (K0H80_01400) - 286983..287930 (-) 948 WP_220072832.1 acyltransferase -
  K0H80_RS01405 (K0H80_01405) - 287955..288839 (-) 885 WP_220072833.1 acyltransferase -
  K0H80_RS01410 (K0H80_01410) comM 288955..290475 (-) 1521 WP_220072834.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K0H80_RS01415 (K0H80_01415) - 290804..292108 (+) 1305 WP_220072835.1 hemolysin family protein -
  K0H80_RS01420 (K0H80_01420) - 292157..293038 (-) 882 WP_220072836.1 diguanylate cyclase -
  K0H80_RS01425 (K0H80_01425) - 293236..294027 (-) 792 WP_258406150.1 transporter substrate-binding domain-containing protein -
  K0H80_RS01430 (K0H80_01430) ilvY 294113..294997 (-) 885 WP_011864093.1 HTH-type transcriptional activator IlvY -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55189.15 Da        Isoelectric Point: 8.2692

>NTDB_id=592703 K0H80_RS01410 WP_220072834.1 288955..290475(-) (comM) [Shewanella aegiceratis strain FJAT-53532]
MAIACVTTRASLGVAAPEVTVEVHLSNGLPAFSLVGLPETSVKEAKERVRSALINAGFEFPQRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQVPDTHLADHEFIGELALSGQIRPCSGILPVIIDARKQDKTLVLPLENRGDAELVGYRKCFFAAHL
QGLAQYLHGQTSLPGLTQDLQWLDTQADTDHKCLSDVIGQYQAKRALEIAAAGNHNLLFLGPPGTGKTMLASRMMQLLPP
LDYDEALEVAAIHSVAGLSIPMQAFYRRPFRSPHHTSSAISLVGGGSHPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFASRFQLIAAMNPSPCGDSANARATPDQIQRYLARLSGPFIDRFDLTIEVPRLPQGTLTSSKQ
GETSRDVAQRVHQARERQLSRAGVLNAELSGKQLTQTAGFSQQDLEFLEQSVNQLGLSVRSYHRLQRVARTIADLEQSRD
VARHHIAQALGYRAMDRLLNSLKTPY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=592703 K0H80_RS01410 WP_220072834.1 288955..290475(-) (comM) [Shewanella aegiceratis strain FJAT-53532]
ATGGCCATCGCCTGCGTCACCACGCGCGCCAGCCTGGGCGTGGCAGCTCCCGAAGTCACGGTCGAAGTGCATCTCAGCAA
TGGCCTGCCCGCCTTCAGCCTGGTGGGACTCCCTGAAACCTCGGTCAAGGAAGCCAAGGAGCGGGTGCGCAGCGCCCTGA
TCAATGCCGGGTTTGAATTTCCTCAACGCAGAATAACCGTCAATCTGGCTCCTGCGGATCTGCCCAAACAGGGGGGCCGC
TACGATCTCCCCATCGCCATCGGTATACTGGCCGCCTCCAAGCAGGTGCCCGATACCCATTTGGCGGATCATGAGTTCAT
CGGCGAGTTGGCCCTCTCCGGGCAGATAAGACCCTGCAGCGGCATCTTGCCGGTGATTATCGACGCCCGTAAACAGGACA
AGACCTTAGTCCTCCCCTTGGAGAATCGAGGCGACGCCGAGCTGGTCGGTTATCGAAAGTGCTTCTTCGCCGCCCACCTG
CAAGGCTTAGCCCAGTACCTGCACGGTCAGACTTCGCTGCCCGGCCTGACCCAAGATCTGCAGTGGCTGGATACTCAGGC
TGACACCGACCACAAGTGCCTCAGCGATGTGATCGGCCAGTACCAGGCCAAACGCGCACTGGAGATCGCCGCCGCCGGCA
ATCATAACCTGTTGTTTCTCGGCCCTCCTGGGACGGGCAAGACGATGCTGGCCAGCCGGATGATGCAGCTGCTGCCGCCA
CTGGACTATGACGAGGCGTTAGAGGTCGCCGCCATTCACTCGGTAGCGGGGCTCAGCATTCCCATGCAGGCCTTTTATCG
GCGCCCCTTTCGCAGCCCTCACCACACCAGCTCGGCCATCTCACTGGTGGGTGGTGGCAGCCATCCCAAGCCGGGCGAGA
TCTCCCTGGCCCATCGGGGCGTGCTCTTCCTCGACGAGGTGGCCGAGTTTCCCCGCAAGGTACTCGACTGCCTGCGAGAG
CCGATGGAGACAGGCGAGGTAGTGATCTCCCGCGCCGCCGCCAAGCTCACCTTCGCCAGCCGCTTTCAGCTGATCGCCGC
CATGAACCCCAGCCCCTGTGGCGACAGTGCCAACGCCAGAGCCACCCCGGATCAGATCCAGCGCTATCTCGCCAGACTCT
CGGGCCCCTTCATCGATCGCTTCGATCTCACCATAGAGGTGCCCCGCCTGCCCCAAGGCACACTCACCAGCAGCAAGCAG
GGGGAAACCAGCCGAGACGTTGCCCAGCGGGTGCATCAGGCCAGGGAGCGCCAGCTAAGCCGCGCCGGGGTACTCAACGC
CGAGCTGAGCGGTAAACAGCTCACGCAAACCGCGGGCTTCAGCCAGCAGGATCTCGAGTTTCTCGAGCAGAGTGTCAACC
AGCTCGGGCTCTCGGTGCGTAGCTATCACAGGCTGCAGAGGGTCGCCCGTACCATAGCGGATCTTGAGCAAAGCAGAGAT
GTCGCTCGCCACCATATCGCCCAAGCGCTTGGCTATCGCGCCATGGATCGTCTGCTCAATAGCCTGAAAACGCCTTACTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.556

100

0.571
  comM Haemophilus influenzae Rd KW20

55.534

100

0.555
  comM Vibrio campbellii strain DS40M4

55.248

99.802

0.551
  comM Glaesserella parasuis strain SC1401

53.649

100

0.538
  comM Legionella pneumophila str. Paris

49.299

98.617

0.486
  comM Legionella pneumophila strain ERS1305867

49.299

98.617

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.03

97.826

0.421