Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K0H79_RS17125 Genome accession   NZ_CP080415
Coordinates   3881501..3883027 (+) Length   508 a.a.
NCBI ID   WP_220076615.1    Uniprot ID   -
Organism   Shewanella sp. FJAT-52076     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3876501..3888027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H79_RS17110 (K0H79_17110) - 3877531..3878334 (+) 804 WP_220076612.1 ABC transporter substrate-binding protein -
  K0H79_RS17115 (K0H79_17115) - 3878396..3880225 (-) 1830 WP_220076613.1 sensor domain-containing diguanylate cyclase -
  K0H79_RS17120 (K0H79_17120) - 3880268..3881218 (-) 951 WP_258405424.1 ABC transporter substrate-binding protein -
  K0H79_RS17125 (K0H79_17125) comM 3881501..3883027 (+) 1527 WP_220076615.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K0H79_RS17130 (K0H79_17130) - 3883261..3884124 (-) 864 WP_220076616.1 ABC transporter substrate-binding protein -
  K0H79_RS17135 (K0H79_17135) - 3884310..3885230 (+) 921 WP_220076617.1 acyltransferase -
  K0H79_RS17140 (K0H79_17140) - 3885223..3886164 (+) 942 WP_220076618.1 acyltransferase -
  K0H79_RS17145 (K0H79_17145) - 3886287..3886808 (-) 522 WP_220076619.1 DUF523 domain-containing protein -
  K0H79_RS17150 (K0H79_17150) - 3887155..3887925 (+) 771 WP_220076620.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54689.07 Da        Isoelectric Point: 8.6852

>NTDB_id=592699 K0H79_RS17125 WP_220076615.1 3881501..3883027(+) (comM) [Shewanella sp. FJAT-52076]
MAIACVATRASRGVEAPAVTVEVHLANGLPAFNLVGLPEASVKEARERVRSALVNAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASGQIPLTSLKDREFVGELALSGDIRHCPGLLPVIVAARRNGRELILPLANRADAELVDYPAIRLCNQL
VHLVAFLHGQQPLPGLEQGAEWLDDIQTSALCLSDVIGQYQAKQALEIAAAGSHNLLMLGLPGCGKTMLASRIMGLLPPL
GYDEALEVAALHSVAGLNIKPSEFHRRPFRSPHHTCSAISLVGGGSVPKPGEISLAHRGVLFLDELAEFPRKVLDCLREP
METGEVVISRAAAKLTFASRFQLIAAMNPSPCGSMGPGNRSSPDQINRYLGRLSGPFLDRFDLSIEVPPLPPGTLTQEGN
NGETSQSVAQRVHRARERQLARAGVLNAELSGKALKNAGFNSADLSFLEQSVNRLGLSVRSFHRLQRVARTIADLENSHM
VERRHIAQALGYRAMDRLLANLGQQLGR

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=592699 K0H79_RS17125 WP_220076615.1 3881501..3883027(+) (comM) [Shewanella sp. FJAT-52076]
ATGGCCATTGCCTGTGTCGCCACCCGTGCAAGCCGGGGGGTTGAAGCCCCGGCGGTTACTGTTGAAGTACATCTGGCCAA
TGGCCTGCCCGCCTTTAACCTGGTAGGCCTGCCGGAAGCCTCTGTCAAAGAGGCCAGAGAGCGGGTACGCAGTGCCTTGG
TAAACGCCGGGTTCGAGTTCCCCATGCGCCGTATCACGGTTAATCTTGCCCCCGCCGATCTGCCTAAACAGGGTGGTCGT
TACGATCTTCCCATCGCCATCGGCATTCTTGCCGCCTCCGGTCAAATCCCCCTCACCAGCCTGAAAGACCGCGAGTTTGT
TGGCGAACTGGCTCTGTCCGGGGATATTCGCCATTGCCCGGGCCTGTTGCCCGTTATCGTGGCTGCGCGCCGCAATGGAC
GCGAACTCATATTGCCACTCGCCAACCGCGCCGACGCCGAACTGGTGGATTATCCCGCCATTCGCCTGTGCAACCAGTTG
GTGCATCTGGTGGCGTTTCTCCATGGTCAGCAGCCGCTGCCGGGGTTGGAACAGGGCGCAGAATGGCTCGATGACATACA
GACCAGCGCGCTTTGCCTCAGTGACGTCATAGGTCAGTATCAGGCCAAGCAGGCACTGGAAATCGCCGCAGCAGGTTCAC
ACAACTTACTGATGCTCGGCTTGCCTGGCTGCGGCAAAACCATGCTAGCCAGCCGCATCATGGGGCTGCTGCCCCCCTTG
GGTTATGATGAAGCCCTCGAAGTGGCGGCCCTGCACTCGGTAGCCGGGCTCAATATCAAACCCAGCGAATTTCACCGACG
TCCTTTCAGGTCGCCCCACCACACCTGTTCAGCAATTTCTCTGGTGGGTGGTGGCAGTGTGCCCAAGCCCGGCGAAATCT
CCCTCGCCCACCGGGGCGTGCTCTTTCTCGACGAGCTGGCTGAATTCCCCCGCAAGGTACTCGACTGCCTGCGCGAACCC
ATGGAAACCGGTGAAGTGGTGATTTCACGGGCAGCCGCAAAGCTCACCTTCGCCAGCCGATTTCAATTAATTGCCGCCAT
GAATCCCAGCCCCTGCGGCAGTATGGGGCCGGGCAACCGCTCAAGCCCTGATCAGATAAACCGCTACCTCGGCAGGCTCT
CCGGCCCTTTTCTTGACCGCTTCGATTTGTCTATCGAGGTGCCCCCTTTGCCACCGGGCACCCTGACTCAGGAAGGCAAT
AACGGCGAAACCAGCCAAAGCGTCGCCCAACGCGTTCACCGCGCCAGGGAACGGCAGCTTGCCCGGGCGGGGGTGCTGAA
TGCCGAACTCTCAGGCAAGGCACTGAAAAATGCCGGCTTTAACAGTGCTGACCTCAGCTTTCTGGAGCAGAGTGTTAATC
GTCTGGGGCTGTCGGTGCGCAGCTTTCATCGCCTGCAGCGGGTCGCCCGCACTATCGCGGATTTGGAAAACAGCCACATG
GTAGAGAGGCGCCATATCGCACAGGCGCTGGGTTACAGGGCCATGGACAGGTTGCTCGCCAATCTTGGACAGCAACTTGG
GCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.719

99.606

0.565
  comM Vibrio cholerae strain A1552

54.971

100

0.555
  comM Vibrio campbellii strain DS40M4

55.03

99.803

0.549
  comM Glaesserella parasuis strain SC1401

54.545

99.606

0.543
  comM Legionella pneumophila str. Paris

47.39

98.031

0.465
  comM Legionella pneumophila strain ERS1305867

47.39

98.031

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.287

98.228

0.425