Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K0H61_RS16080 Genome accession   NZ_CP080413
Coordinates   3752068..3753594 (+) Length   508 a.a.
NCBI ID   WP_220050471.1    Uniprot ID   -
Organism   Shewanella acanthi strain FJAT-51860     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3747068..3758594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H61_RS16065 (K0H61_16065) - 3748484..3748867 (+) 384 WP_220050469.1 RidA family protein -
  K0H61_RS16070 (K0H61_16070) - 3749109..3750773 (+) 1665 WP_220050470.1 AMP-binding protein -
  K0H61_RS16075 (K0H61_16075) - 3750951..3751901 (+) 951 WP_220052771.1 calcium/sodium antiporter -
  K0H61_RS16080 (K0H61_16080) comM 3752068..3753594 (+) 1527 WP_220050471.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K0H61_RS16085 (K0H61_16085) - 3753693..3754589 (+) 897 WP_220050472.1 acyltransferase -
  K0H61_RS16090 (K0H61_16090) - 3754601..3755545 (+) 945 WP_220050473.1 acyltransferase -
  K0H61_RS16095 (K0H61_16095) - 3755990..3756736 (+) 747 WP_220050474.1 GntR family transcriptional regulator -
  K0H61_RS16100 (K0H61_16100) prpB 3756809..3757687 (+) 879 WP_220050475.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55589.75 Da        Isoelectric Point: 8.1085

>NTDB_id=592655 K0H61_RS16080 WP_220050471.1 3752068..3753594(+) (comM) [Shewanella acanthi strain FJAT-51860]
MAIACVHTRASCGVEAPAVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPASSLQQTEFVGELALSGEIRYCQGLLPAIIASQREDKTLILPLDNRHDAELVGYSKVFFGSHL
QTLAAFLHGQNQLPGLDIQTQWHRDDNTETEPCLSDVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRMMSILPQ
LNYQEALEVAAIHSVAGIDIKPQHFLKRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDANNRSTPDQVQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQQT
APSEKSQEIAKRVKQARETQFARAGILNSELSGKQLGHYSGLKQEDLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQS
RNTERRHLAQALGYRAMDRLLARLNLQF

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=592655 K0H61_RS16080 WP_220050471.1 3752068..3753594(+) (comM) [Shewanella acanthi strain FJAT-51860]
ATGGCGATTGCCTGCGTGCACACCCGAGCCAGTTGCGGCGTGGAAGCCCCCGCTGTCACCGTCGAAGTTCATTTAAGTAA
CGGGCTTCCTGCCTTCAATCTTGTTGGTCTACCCGAAGCTTCAGTTAAAGAAGCCCGCGAGCGAGTTCGCAGCGCACTGA
TTAATGCAGGGTTTGAATTCCCGATGCGCCGCATCACTGTCAATCTCGCACCTGCCGATCTTCCCAAACAGGGTGGGCGT
TACGATCTTCCCATCGCTGTAGGCATCTTAGCCGCCTCGGAGCAAATCCCTGCTTCAAGTTTGCAACAGACTGAGTTTGT
TGGCGAACTCGCTCTTTCAGGTGAAATCCGTTATTGCCAAGGGCTACTGCCCGCGATCATTGCTAGCCAGCGTGAAGATA
AAACCTTAATTCTGCCCCTCGACAATCGCCATGATGCCGAACTTGTCGGCTATTCGAAGGTGTTTTTCGGTTCGCATTTG
CAAACCCTCGCAGCCTTCCTCCACGGTCAAAATCAGCTGCCAGGACTCGATATCCAAACCCAGTGGCATAGAGATGACAA
TACCGAAACCGAGCCCTGTCTAAGTGATGTGATAGGTCAATATCAAGCAAAACAGGCGCTCGAAATAGCCGCTGCAGGGG
GCCATAACCTATTGATGTTAGGCCCACCGGGAACAGGTAAAACCATGCTTGCGAGTCGGATGATGTCGATACTGCCTCAA
CTCAATTACCAAGAAGCGCTCGAAGTAGCTGCCATTCACTCCGTAGCCGGTATCGATATCAAGCCGCAGCACTTCTTAAA
ACGCCCCTTTCGCGCGCCGCACCATACCAGCTCATCCATCTCCCTAGTCGGCGGTGGCAGTATCCCAAAGCCCGGCGAAA
TTTCGTTGGCACACCGGGGCGTTTTGTTTTTAGATGAAGTGGCAGAATTCCCCCGCAAAGTATTGGATTGCCTGCGAGAG
CCAATGGAAACAGGTGAAGTTGTCATCTCCCGCGCAGCCGCAAAACTTACATTTTTAAGCCGCTTTCAACTTATTGCCGC
CATGAATCCTAGCCCTAGTGGCGACATTGATGCCAATAATAGGTCCACTCCCGACCAAGTACAGCGCTATTTATCTCGTC
TCTCTGGCCCCTTTCTCGATAGATTTGATCTCACCATCGAAGTGCCAAAACTGCCCGCAGGCACACTCACCCAGCAAACG
GCACCAAGTGAAAAAAGCCAAGAGATAGCCAAACGCGTTAAACAAGCTAGAGAAACTCAATTCGCCCGAGCTGGCATATT
GAATAGCGAACTATCGGGTAAGCAACTAGGCCATTACAGCGGCCTTAAACAGGAGGATTTAGTGTTTTTAGAACAAAGCG
TGGTGAAGTTAGGCTTATCTGTTCGCAGCTTTCACCGTATTCAGCGGGTCGCCCGCACAATTGCCGATCTTGAGCAATCC
CGCAATACTGAACGCCGACACCTCGCCCAAGCCCTAGGCTACCGAGCTATGGATAGATTATTAGCGCGGCTCAACCTGCA
GTTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.315

100

0.553
  comM Haemophilus influenzae Rd KW20

55.227

99.803

0.551
  comM Glaesserella parasuis strain SC1401

54.545

99.606

0.543
  comM Vibrio campbellii strain DS40M4

54.134

100

0.541
  comM Legionella pneumophila str. Paris

48.111

99.016

0.476
  comM Legionella pneumophila strain ERS1305867

48.111

99.016

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.533

99.016

0.441