Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K0H59_RS19255 Genome accession   NZ_CP080411
Coordinates   4403115..4404641 (+) Length   508 a.a.
NCBI ID   WP_088212275.1    Uniprot ID   -
Organism   Shewanella sp. FJAT-51649     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4398115..4409641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H59_RS19230 (K0H59_19230) - 4398187..4399137 (+) 951 WP_220054070.1 calcium/sodium antiporter -
  K0H59_RS19235 (K0H59_19235) - 4399314..4400018 (+) 705 WP_220054071.1 hypothetical protein -
  K0H59_RS19240 (K0H59_19240) - 4400102..4401181 (+) 1080 WP_220054072.1 sensor histidine kinase -
  K0H59_RS19245 (K0H59_19245) - 4401181..4401777 (+) 597 WP_088212277.1 DNA-binding response regulator -
  K0H59_RS19250 (K0H59_19250) - 4401783..4402898 (-) 1116 WP_220054073.1 DUF1963 domain-containing protein -
  K0H59_RS19255 (K0H59_19255) comM 4403115..4404641 (+) 1527 WP_088212275.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K0H59_RS19260 (K0H59_19260) - 4404742..4405644 (+) 903 WP_088212274.1 acyltransferase -
  K0H59_RS19265 (K0H59_19265) - 4405652..4406593 (+) 942 WP_220054074.1 acyltransferase -
  K0H59_RS19270 (K0H59_19270) - 4406654..4407127 (-) 474 WP_220054075.1 DUF523 domain-containing protein -
  K0H59_RS19275 (K0H59_19275) - 4407476..4408264 (+) 789 WP_109287226.1 GntR family transcriptional regulator -
  K0H59_RS19280 (K0H59_19280) prpB 4408331..4409209 (+) 879 WP_089066750.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55109.45 Da        Isoelectric Point: 7.8441

>NTDB_id=592609 K0H59_RS19255 WP_088212275.1 4403115..4404641(+) (comM) [Shewanella sp. FJAT-51649]
MAIACVHTRASCGVEAPEVIVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASEQIPASSLKNTEFVGELALSGQIRHCQGLLPAIIAAKRHNNQLILPLENRHDAELVGYHGVYFASHL
QSLAAFLHGQAPLPMLEQQLEWISDEAPTTQPCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRIMALLPI
LNYEEALEVAAIHSVAGINIKPQDFLKRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIEGANRATPDQVQRYLARLSGPFLDRFDLTIEVPKLPAGTLTQPT
SASETSDEIAKRVKRARDSQLARAGMLNSELSGKQLKQFGGLSDADLGFLEQSVVKLGLSVRSFHRIQRVARTIADLEQA
PNTERRHLAQALGYRAMDKLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=592609 K0H59_RS19255 WP_088212275.1 4403115..4404641(+) (comM) [Shewanella sp. FJAT-51649]
ATGGCGATAGCCTGCGTGCATACCCGAGCCAGTTGCGGTGTTGAGGCTCCAGAAGTCATAGTGGAAGTGCATCTCAGTAA
TGGTCTACCCGCCTTTAATCTGGTGGGCTTACCCGAAGCCTCGGTCAAAGAAGCGCGCGAGCGTGTACGCAGCGCTTTGA
TCAATGCGGGATTTGAATTCCCCATGCGCAGGATAACGGTTAATCTCGCGCCGGCGGACTTGCCTAAACAAGGGGGCCGT
TACGATTTGCCCATCGCCATAGGCATTCTGGCGGCTTCGGAGCAAATCCCCGCCAGCAGCCTTAAAAATACCGAATTTGT
TGGCGAGCTCGCGCTCTCAGGGCAGATACGCCATTGCCAAGGGTTACTGCCCGCCATCATTGCGGCTAAACGCCATAATA
ATCAGTTAATTCTTCCCTTAGAGAATCGCCACGATGCCGAGCTTGTGGGCTATCACGGCGTCTATTTTGCTTCCCATTTG
CAAAGCTTAGCCGCGTTTCTCCACGGACAGGCGCCACTGCCTATGCTCGAGCAACAGCTCGAGTGGATTAGCGACGAGGC
GCCAACCACCCAGCCTTGTCTAAGCGACGTTATAGGCCAGTATCAAGCCAAACAAGCCCTCGAAATCGCTGCGGCCGGAA
ACCATAACTTACTGATGCTCGGCCCGCCGGGCACAGGCAAAACCATGTTAGCCAGCCGAATTATGGCCTTATTGCCCATA
CTCAATTACGAAGAGGCATTAGAGGTCGCCGCCATTCATTCGGTGGCGGGCATTAATATCAAACCGCAGGATTTTTTGAA
GCGGCCATTTCGCGCGCCGCACCATACCAGTTCGTCCATCTCCTTGGTCGGCGGTGGCAGCATTCCTAAACCTGGGGAAA
TCTCCCTAGCCCATCGCGGGGTGTTGTTTTTGGATGAAGTCGCCGAGTTCCCCCGTAAGGTGCTCGATTGCCTGCGTGAA
CCCATGGAAACGGGTGAAGTAGTGATCTCCCGCGCCGCCGCTAAGTTAACCTTTTTGAGCCGCTTTCAGTTGATCGCCGC
CATGAATCCCAGTCCCAGCGGCGATATTGAAGGGGCGAACCGCGCCACACCCGATCAGGTTCAGCGTTATCTCGCCAGAC
TCTCGGGGCCTTTCTTAGATAGGTTCGACCTCACCATCGAAGTCCCAAAACTCCCCGCGGGCACACTCACACAACCAACA
AGTGCCAGCGAAACCAGTGATGAAATAGCCAAGCGAGTCAAACGCGCCCGCGATAGTCAACTGGCGCGAGCTGGCATGCT
CAACAGTGAACTCTCGGGAAAACAGCTAAAACAATTCGGTGGCCTCAGCGACGCCGACTTAGGCTTTTTAGAGCAGAGTG
TCGTCAAGCTCGGGTTATCCGTTCGCAGCTTCCATCGCATTCAACGTGTTGCCCGCACCATTGCCGATCTGGAGCAAGCC
CCCAATACCGAACGGCGCCACCTCGCCCAAGCCTTAGGTTATCGCGCCATGGACAAACTATTAGCTCGCTTATCCCAGCA
GTATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.335

100

0.569
  comM Haemophilus influenzae Rd KW20

56.41

99.803

0.563
  comM Vibrio campbellii strain DS40M4

55.906

100

0.559
  comM Glaesserella parasuis strain SC1401

56.126

99.606

0.559
  comM Legionella pneumophila str. Paris

47.047

100

0.47
  comM Legionella pneumophila strain ERS1305867

47.047

100

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.141

99.016

0.427