Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KY495_RS09655 Genome accession   NZ_CP080378
Coordinates   2151150..2151641 (+) Length   163 a.a.
NCBI ID   WP_219883428.1    Uniprot ID   -
Organism   Massilia sp. PAMC28688     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2146150..2156641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KY495_RS09640 (KY495_09640) - 2146996..2147544 (+) 549 WP_219883425.1 hypothetical protein -
  KY495_RS09645 (KY495_09645) - 2147545..2148015 (-) 471 WP_219883426.1 hypothetical protein -
  KY495_RS09650 (KY495_09650) uvrA 2148018..2150867 (-) 2850 WP_219883427.1 excinuclease ABC subunit UvrA -
  KY495_RS09655 (KY495_09655) ssb 2151150..2151641 (+) 492 WP_219883428.1 single-stranded DNA-binding protein Machinery gene
  KY495_RS09660 (KY495_09660) - 2152814..2153143 (-) 330 WP_219883429.1 hypothetical protein -
  KY495_RS24375 (KY495_09665) - 2153516..2153668 (+) 153 WP_219883430.1 serine hydrolase -
  KY495_RS09670 (KY495_09670) - 2153794..2154555 (+) 762 WP_219883431.1 serine hydrolase -
  KY495_RS09675 (KY495_09675) - 2154602..2155378 (+) 777 WP_219883432.1 PEP-CTERM sorting domain-containing protein -
  KY495_RS09680 (KY495_09680) - 2156185..2156535 (+) 351 WP_219883433.1 VOC family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17783.91 Da        Isoelectric Point: 5.9467

>NTDB_id=592409 KY495_RS09655 WP_219883428.1 2151150..2151641(+) (ssb) [Massilia sp. PAMC28688]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDKNTGEQRETTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIVAENMQMLGGRQGMGGGDSMDDGGGYEAPQRQAPQRQAPPAPAARPAPKPAPNFSDMDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=592409 KY495_RS09655 WP_219883428.1 2151150..2151641(+) (ssb) [Massilia sp. PAMC28688]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGTAATCTGGGTCGCGATCCCGAGATCCGCTACATGCCGAGCGGAGACGC
AATCGCCAACATCGCCGTGGCAACCTCGTACAAATCAAAAGACAAGAACACGGGCGAGCAGCGCGAGACCACCGAGTGGC
ACCGCATTTCCTTCTTTGGCCGCCTGGCCGAGATCGTCGGCCAGTACCTGAAAAAAGGTTCCTCGGTGTATGTGGAAGGC
CGCCTGCAGACGCGCAAGTACACCGACAAGGATGGTGTGGAAAAATACGCGACCGACATCGTGGCTGAAAACATGCAGAT
GCTGGGCGGACGCCAGGGCATGGGCGGCGGCGACAGCATGGATGACGGCGGCGGCTATGAAGCCCCGCAGCGCCAGGCAC
CGCAACGCCAGGCGCCACCGGCACCGGCCGCACGCCCGGCACCAAAGCCGGCGCCGAACTTCTCGGATATGGATGACGAC
ATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.556

100

0.558
  ssb Neisseria gonorrhoeae MS11

52

100

0.558
  ssb Neisseria meningitidis MC58

51.429

100

0.552
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.546
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.146

100

0.362