Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H650_RS15855 Genome accession   NC_021500
Coordinates   3370653..3371177 (+) Length   174 a.a.
NCBI ID   WP_017459456.1    Uniprot ID   -
Organism   Enterobacter sp. R4-368     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3365653..3376177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H650_RS15840 (H650_16940) - 3366221..3366931 (-) 711 WP_020456128.1 response regulator -
  H650_RS15845 (H650_16945) - 3367212..3367565 (+) 354 WP_020456129.1 MmcQ/YjbR family DNA-binding protein -
  H650_RS15850 (H650_16950) uvrA 3367566..3370391 (-) 2826 WP_020456130.1 excinuclease ABC subunit UvrA -
  H650_RS15855 (H650_16955) ssb 3370653..3371177 (+) 525 WP_017459456.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H650_RS25765 (H650_16960) - 3371287..3371460 (-) 174 WP_020456131.1 hypothetical protein -
  H650_RS15860 (H650_16965) - 3371505..3372278 (-) 774 WP_020456132.1 amino acid ABC transporter substrate-binding protein -
  H650_RS15865 (H650_16970) - 3372301..3373071 (-) 771 WP_020456133.1 amino acid ABC transporter ATP-binding protein -
  H650_RS15870 (H650_16975) - 3373049..3373744 (-) 696 WP_189660072.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18677.62 Da        Isoelectric Point: 5.2456

>NTDB_id=59234 H650_RS15855 WP_017459456.1 3370653..3371177(+) (ssb) [Enterobacter sp. R4-368]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGETKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=59234 H650_RS15855 WP_017459456.1 3370653..3371177(+) (ssb) [Enterobacter sp. R4-368]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAACCAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAGCTGGCGGAAGTGGCCGGCGAGTACCTGCGTAAAGGCTCTCAGGTTTATATT
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACTGAAGTAGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGTGGCGGCGCTCCGGCAGGTGGCGGCCAGCAGCAGGGCGGCTGGGGTC
AGCCTCAGCAGCCACAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCACCGGCACCG
TCTAACGAACCGCCGATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.379

Multiple sequence alignment