Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | K0E66_RS11540 | Genome accession | NZ_CP080295 |
| Coordinates | 2839872..2840330 (+) | Length | 152 a.a. |
| NCBI ID | WP_005776338.1 | Uniprot ID | A0A4Q0U428 |
| Organism | Bacteroides fragilis strain IHMA_4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2803307..2840330 | 2839872..2840330 | within | 0 |
Gene organization within MGE regions
Location: 2803307..2840330
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K0E66_RS11360 (K0E66_11320) | hsdR | 2803307..2805622 (+) | 2316 | WP_032539847.1 | EcoAI/FtnUII family type I restriction enzme subunit R | - |
| K0E66_RS11365 (K0E66_11325) | - | 2805625..2807145 (+) | 1521 | WP_032539848.1 | class I SAM-dependent DNA methyltransferase | - |
| K0E66_RS11370 (K0E66_11330) | - | 2807161..2808177 (+) | 1017 | WP_032529890.1 | hypothetical protein | - |
| K0E66_RS11375 (K0E66_11335) | - | 2808170..2808616 (+) | 447 | WP_010992489.1 | Fic family protein | - |
| K0E66_RS11380 (K0E66_11340) | - | 2808643..2809410 (+) | 768 | WP_233481128.1 | restriction endonuclease subunit S | - |
| K0E66_RS11385 (K0E66_11345) | - | 2809390..2810709 (-) | 1320 | WP_223129524.1 | restriction endonuclease subunit S | - |
| K0E66_RS11390 (K0E66_11350) | - | 2810768..2811574 (+) | 807 | WP_032536871.1 | tyrosine-type recombinase/integrase | - |
| K0E66_RS11395 (K0E66_11355) | - | 2812041..2812955 (-) | 915 | WP_032539850.1 | DUF4373 domain-containing protein | - |
| K0E66_RS11400 (K0E66_11360) | - | 2813107..2813454 (-) | 348 | WP_032539851.1 | SH3 beta-barrel fold-containing protein | - |
| K0E66_RS11405 (K0E66_11365) | upfY | 2814540..2815100 (+) | 561 | WP_080715543.1 | capsular polysaccharide transcription antiterminator UpfY | - |
| K0E66_RS11410 (K0E66_11370) | - | 2815112..2815594 (+) | 483 | WP_032539853.1 | UpxZ family transcription anti-terminator antagonist | - |
| K0E66_RS11415 (K0E66_11375) | rfbA | 2815627..2816520 (+) | 894 | WP_032539854.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| K0E66_RS11420 (K0E66_11380) | - | 2816510..2816914 (+) | 405 | WP_032539855.1 | sugar 3,4-ketoisomerase | - |
| K0E66_RS11425 (K0E66_11385) | - | 2816911..2817327 (+) | 417 | WP_032539856.1 | sugar 3,4-ketoisomerase | - |
| K0E66_RS11430 (K0E66_11390) | - | 2817320..2817841 (+) | 522 | WP_032539857.1 | acyltransferase | - |
| K0E66_RS11435 (K0E66_11395) | - | 2817846..2818943 (+) | 1098 | WP_032539858.1 | DegT/DnrJ/EryC1/StrS family aminotransferase | - |
| K0E66_RS11440 (K0E66_11400) | - | 2818948..2819367 (+) | 420 | WP_032539859.1 | adenylyltransferase/cytidyltransferase family protein | - |
| K0E66_RS11445 (K0E66_11405) | - | 2819357..2820358 (+) | 1002 | WP_137570017.1 | sulfotransferase | - |
| K0E66_RS11450 (K0E66_11410) | - | 2820348..2821778 (+) | 1431 | WP_137570018.1 | oligosaccharide flippase family protein | - |
| K0E66_RS11455 (K0E66_11415) | - | 2821775..2823010 (+) | 1236 | WP_032540034.1 | hypothetical protein | - |
| K0E66_RS11460 (K0E66_11420) | - | 2823007..2824116 (+) | 1110 | WP_032540035.1 | DegT/DnrJ/EryC1/StrS family aminotransferase | - |
| K0E66_RS11465 (K0E66_11425) | rfbF | 2824121..2824888 (+) | 768 | WP_032540037.1 | glucose-1-phosphate cytidylyltransferase | - |
| K0E66_RS11470 (K0E66_11430) | rfbG | 2824896..2825987 (+) | 1092 | WP_032540039.1 | CDP-glucose 4,6-dehydratase | - |
| K0E66_RS11475 (K0E66_11435) | - | 2825975..2826436 (+) | 462 | WP_032529214.1 | dTDP-4-dehydrorhamnose 3,5-epimerase family protein | - |
| K0E66_RS11480 (K0E66_11440) | - | 2826438..2827355 (+) | 918 | WP_050550243.1 | glycosyltransferase family 2 protein | - |
| K0E66_RS11485 (K0E66_11445) | - | 2827357..2828526 (+) | 1170 | WP_032540040.1 | O-antigen polymerase | - |
| K0E66_RS11490 (K0E66_11450) | - | 2828535..2829557 (+) | 1023 | WP_032540045.1 | polysaccharide biosynthesis protein | - |
| K0E66_RS11495 (K0E66_11455) | wecB | 2829545..2830675 (+) | 1131 | WP_137570019.1 | non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase | - |
| K0E66_RS11500 (K0E66_11460) | - | 2830696..2831553 (+) | 858 | WP_233481129.1 | dTDP-4-dehydrorhamnose reductase family protein | - |
| K0E66_RS11505 (K0E66_11465) | - | 2831565..2832764 (+) | 1200 | WP_032540021.1 | glycosyltransferase family 4 protein | - |
| K0E66_RS11510 (K0E66_11470) | - | 2832771..2833667 (+) | 897 | WP_032540020.1 | NAD-dependent epimerase/dehydratase family protein | - |
| K0E66_RS11515 (K0E66_11475) | - | 2833786..2834733 (+) | 948 | WP_032540018.1 | MraY family glycosyltransferase | - |
| K0E66_RS11520 (K0E66_11480) | - | 2834792..2836366 (-) | 1575 | WP_032531836.1 | ribonuclease E/G | - |
| K0E66_RS11525 (K0E66_11485) | - | 2836646..2836921 (-) | 276 | WP_005776335.1 | HU family DNA-binding protein | - |
| K0E66_RS11530 (K0E66_11490) | mutY | 2837126..2838172 (+) | 1047 | WP_032540017.1 | A/G-specific adenine glycosylase | - |
| K0E66_RS11535 (K0E66_11495) | - | 2838216..2839784 (+) | 1569 | WP_032540016.1 | sulfatase family protein | - |
| K0E66_RS11540 (K0E66_11500) | ssb | 2839872..2840330 (+) | 459 | WP_005776338.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16725.68 Da Isoelectric Point: 5.7512
>NTDB_id=592024 K0E66_RS11540 WP_005776338.1 2839872..2840330(+) (ssb) [Bacteroides fragilis strain IHMA_4]
MSVNKVILIGNVGKDPEVRYLDTGIAVASFPLATTDRAYTLSNGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYVEG
KIRTRSYDDQSGAKRYVTEIFVDNMEMLTPKGAGAGSYAPSQQQAAAPVRPQPQQPQQSASSQDNPADDLPF
MSVNKVILIGNVGKDPEVRYLDTGIAVASFPLATTDRAYTLSNGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYVEG
KIRTRSYDDQSGAKRYVTEIFVDNMEMLTPKGAGAGSYAPSQQQAAAPVRPQPQQPQQSASSQDNPADDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=592024 K0E66_RS11540 WP_005776338.1 2839872..2840330(+) (ssb) [Bacteroides fragilis strain IHMA_4]
ATGTCAGTAAATAAAGTGATATTGATAGGAAATGTCGGTAAAGACCCTGAAGTGAGATATTTGGATACGGGTATTGCTGT
GGCCAGTTTTCCTTTGGCTACAACCGACCGTGCATATACTTTGTCTAATGGTACACAAGTGCCTGAGCGGACTGAATGGC
ACAATCTTGTACTTTGGCGAGGACTGGCAGAAACTGCCGAGAAATATGTACATAAAGGTGATAAGCTCTATGTGGAAGGT
AAGATAAGAACTCGTTCTTATGATGACCAGAGTGGGGCAAAACGCTATGTTACCGAGATATTTGTAGATAATATGGAAAT
GCTGACTCCGAAAGGTGCCGGTGCCGGATCGTATGCTCCGTCACAGCAGCAGGCTGCTGCTCCCGTACGGCCTCAACCGC
AACAACCGCAGCAATCGGCATCTTCACAAGATAATCCGGCAGACGATCTGCCGTTTTAA
ATGTCAGTAAATAAAGTGATATTGATAGGAAATGTCGGTAAAGACCCTGAAGTGAGATATTTGGATACGGGTATTGCTGT
GGCCAGTTTTCCTTTGGCTACAACCGACCGTGCATATACTTTGTCTAATGGTACACAAGTGCCTGAGCGGACTGAATGGC
ACAATCTTGTACTTTGGCGAGGACTGGCAGAAACTGCCGAGAAATATGTACATAAAGGTGATAAGCTCTATGTGGAAGGT
AAGATAAGAACTCGTTCTTATGATGACCAGAGTGGGGCAAAACGCTATGTTACCGAGATATTTGTAGATAATATGGAAAT
GCTGACTCCGAAAGGTGCCGGTGCCGGATCGTATGCTCCGTCACAGCAGCAGGCTGCTGCTCCCGTACGGCCTCAACCGC
AACAACCGCAGCAATCGGCATCTTCACAAGATAATCCGGCAGACGATCTGCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
41.573 |
100 |
0.487 |
| ssb | Neisseria meningitidis MC58 |
39.205 |
100 |
0.454 |
| ssb | Neisseria gonorrhoeae MS11 |
39.205 |
100 |
0.454 |
| ssb | Glaesserella parasuis strain SC1401 |
37.079 |
100 |
0.434 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
32.37 |
100 |
0.368 |