Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KZ686_RS05810 Genome accession   NZ_CP080293
Coordinates   1291642..1292157 (+) Length   171 a.a.
NCBI ID   WP_149320126.1    Uniprot ID   -
Organism   Cupriavidus cauae strain PHS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1286642..1297157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ686_RS05800 (KZ686_05790) uvrA 1286713..1289634 (-) 2922 WP_265633212.1 excinuclease ABC subunit UvrA -
  KZ686_RS05805 (KZ686_05795) - 1290169..1291446 (+) 1278 WP_149320125.1 MFS transporter -
  KZ686_RS05810 (KZ686_05800) ssb 1291642..1292157 (+) 516 WP_149320126.1 single-stranded DNA-binding protein Machinery gene
  KZ686_RS05815 (KZ686_05805) - 1292379..1293596 (+) 1218 WP_265633213.1 acyl-CoA dehydrogenase family protein -
  KZ686_RS05820 (KZ686_05810) - 1293614..1294978 (+) 1365 WP_265633214.1 LLM class flavin-dependent oxidoreductase -
  KZ686_RS05825 (KZ686_05815) - 1295128..1296711 (+) 1584 WP_265633215.1 TerC family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18174.94 Da        Isoelectric Point: 5.9566

>NTDB_id=592009 KZ686_RS05810 WP_149320126.1 1291642..1292157(+) (ssb) [Cupriavidus cauae strain PHS1]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKQSGDMKELTEWHRVAFFGKLAEIAGQYLRKGSQVYIEG
RIRTRKWQDQSGQDKYSTEIVAEQMQMLGSRQGGGGGEEGGGYARESSGGGYGGGGGRGGAQGGGGGQGGARRPQQSPSN
GFEDMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=592009 KZ686_RS05810 WP_149320126.1 1291642..1292157(+) (ssb) [Cupriavidus cauae strain PHS1]
ATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAACCTCGGCGCGGACCCCGAAACGCGCTATATGCCCAGTGGCGATGC
CGTGACCAATATCCGGCTGGCCACCACGGACCGCTACAAGGACAAGCAGAGCGGCGACATGAAGGAGCTGACCGAATGGC
ACCGCGTGGCCTTCTTCGGCAAGCTCGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTATATCGAGGGC
CGCATCCGTACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACAAGTACAGCACCGAGATCGTCGCCGAGCAGATGCAGAT
GCTGGGCTCGCGCCAGGGCGGCGGCGGCGGCGAGGAAGGCGGCGGCTACGCGCGCGAATCGTCGGGCGGCGGCTATGGCG
GTGGCGGCGGCCGTGGCGGTGCGCAGGGCGGTGGTGGCGGCCAGGGCGGCGCACGCCGGCCGCAGCAGTCGCCGTCGAAC
GGCTTCGAGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.696

100

0.579
  ssb Glaesserella parasuis strain SC1401

51.667

100

0.544
  ssb Neisseria meningitidis MC58

43.407

100

0.462
  ssb Neisseria gonorrhoeae MS11

42.857

100

0.456
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.426

100

0.368