Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6J63_RS08715 Genome accession   NZ_AP018765
Coordinates   1706930..1708270 (-) Length   446 a.a.
NCBI ID   WP_105892719.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-2 isolate 12H49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1701930..1713270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J63_RS08695 (CHBNII2_16710) - 1702278..1703798 (-) 1521 WP_005661480.1 Na+/H+ antiporter NhaC family protein -
  K6J63_RS08700 (CHBNII2_16720) - 1704241..1704645 (+) 405 WP_005656923.1 H-NS family nucleoid-associated regulatory protein -
  K6J63_RS08705 (CHBNII2_16730) purU 1704715..1705551 (+) 837 WP_005656925.1 formyltetrahydrofolate deformylase -
  K6J63_RS08710 (CHBNII2_16740) aroA 1705551..1706849 (+) 1299 WP_005656927.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  K6J63_RS08715 (CHBNII2_16750) rarA 1706930..1708270 (-) 1341 WP_105892719.1 replication-associated recombination protein A Machinery gene
  K6J63_RS08720 (CHBNII2_16760) lolA 1708331..1708948 (-) 618 WP_042611209.1 outer membrane lipoprotein chaperone LolA -
  K6J63_RS08725 (CHBNII2_16770) - 1708966..1711734 (-) 2769 WP_058222225.1 DNA translocase FtsK -
  K6J63_RS08730 (CHBNII2_16780) lrp 1711736..1712215 (-) 480 WP_005664572.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50249.10 Da        Isoelectric Point: 6.3312

>NTDB_id=59187 K6J63_RS08715 WP_105892719.1 1706930..1708270(-) (rarA) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
MSNLNFDFAENDFRPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLVIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYSAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=59187 K6J63_RS08715 WP_105892719.1 1706930..1708270(-) (rarA) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACGAGTCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGCCATATTCATTCAATGA
TTTTGTGGGGCCCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCGGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGCATCAAAGAAATTCGTGAAGCGATTGATCGTGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCACACATTGAAGACGGAA
CCGTTATTTTCATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCATTGCTTTCTCGTGCCCGCGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTGAACGAGGATTGGGTAA
AGAGCGGCTAATTTTAGAAGAGAATTTACTGCAAGTGCTTGCCGAATATGTTAATGGGGATGCTCGATTAGCCTTGAATT
GTCTCGAATTAATGGTGGATATGGCAGATGAAACTGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGTGAACGCCAAGCGAGATTTGATAAACAAGGCGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTCCGAGG
TTCTGCTCCAGATGCTGCGCTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGCGATCCTCTATATGTCGCGCGTCGAT
TACTTGTCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGGGAGCGTGCCATTGCCCAAGCCATCATTTATCTTGCGGTTGCTCCAAAAAGTAATGC
AGTTTATACGGCGTTTAATACTGCAAAACAGCAAGCGAAAGATTTACCCGATTACGATGTTCCCCCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAGCTTGGCTATAGTGCTGAATATCGTTATGCCCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGACACTCAATATTATTTTCCGACAAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.243

94.843

0.372

Multiple sequence alignment